Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1513
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.23 
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   0.93 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   2.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.5  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 162 PIGFPDTPNRITVAVGDRFGDDDSTTPRLPIEA 260
           P   PD    +   V +RFGDD  T  +LP++A
Sbjct: 34  PDYLPDRYRSVATQVFNRFGDD--TESKLPVKA 64


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 289 VYQINSKSPFASIGSLG 239
           VYQ+  +SPF  +G+ G
Sbjct: 297 VYQVEKRSPFRYLGARG 313


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 211 SPTATVILLGVSGNPIGLDP 152
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 211 SPTATVILLGVSGNPIGLDP 152
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 227 RLNNAKTSDRSERRLRVDLID 289
           R++   T DR+++  R+D +D
Sbjct: 497 RMDRMDTMDRTDKMSRIDRMD 517


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 343 LEAHRKNPQTHV 378
           L  H ++PQTHV
Sbjct: 325 LNVHFRSPQTHV 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,744
Number of Sequences: 438
Number of extensions: 1687
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)