Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1511
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    27   1.1  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   3.4  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   5.9  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   5.9  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 346 CCIASDSCSCRPSFLCDCTCSPC 278
           C    +SC C+ S + +C CS C
Sbjct: 23  CQDCKESCGCKSSAVDNCKCSSC 45


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 109 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQAKSNEG 231
           YG  +S   +  +D +   + ++S  E  A GD    +N+G
Sbjct: 528 YGTTNSKKVVASYDNTDDNEYSVSKSELYATGDTNNTTNQG 568


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 73  HPTYSH*QTLVPFWERQH 20
           HP Y + ++  PFWE  H
Sbjct: 197 HPAYENDRSWRPFWENYH 214


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 291 RVVLVQNKSFSVDHSDCSNGAFVRFSLCIADCSTFTSRNINISSCRAIKTSH-FHIRIVL 115
           R+VLVQNK   VD      G     ++  +   T    ++++SS + I   H  H + + 
Sbjct: 377 RLVLVQNKDMEVD----DGGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLYHLIHSKNLT 432

Query: 114 SVISFV 97
           +++ FV
Sbjct: 433 NILCFV 438


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 109 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGD 207
           +   + N  +  F      +VN+ GG GG+V D
Sbjct: 134 FRSSNQNSSLKSFQSVPDSNVNVFGGFGGSVVD 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,401
Number of Sequences: 5004
Number of extensions: 29781
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)