Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1511
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0001 - 11373469-11373862,11374072-11374264,11374414-113744... 33 0.12
05_04_0311 - 20120172-20122115 32 0.28
03_01_0646 + 4742398-4742994,4743681-4744085 31 0.64
11_01_0252 + 1934505-1935032,1936001-1936957 28 3.4
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306... 28 3.4
05_03_0597 + 16014809-16015120,16015234-16015398,16015497-160159... 28 3.4
12_02_0744 - 22704637-22705341 28 4.5
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 28 4.5
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387... 28 4.5
05_04_0422 + 21122099-21122194,21122353-21122510,21122651-211228... 28 4.5
04_04_0765 - 27910189-27912393,27912521-27912598 28 4.5
04_03_0578 - 17463545-17464417 28 4.5
11_01_0271 + 2039100-2041760 27 6.0
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 27 6.0
02_05_1323 + 35700147-35701649 27 6.0
12_01_0272 + 1985348-1986036,1986142-1988020 27 7.9
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422... 27 7.9
07_03_0479 + 18564733-18565716 27 7.9
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 27 7.9
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524... 27 7.9
01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879 27 7.9
>09_03_0001 -
11373469-11373862,11374072-11374264,11374414-11374482,
11374858-11374984,11375223-11375485,11375697-11375785,
11375832-11375909,11376070-11376141,11376234-11376372,
11378857-11379323,11380781-11381345,11382553-11382622
Length = 841
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 154 SATGDVNISGGE-GGAVGDAQAKSNEG--AIRTVRMINGKTFVLYKDYTYSHKGKMACK 321
+A +N+SG + G + D+ K+N G R V N + VLY Y+Y G M K
Sbjct: 433 TALEKLNLSGNQLNGPIPDSLCKNNAGQFVFRYVAKTNPELLVLYNYYSYGSDGNMCNK 491
>05_04_0311 - 20120172-20122115
Length = 647
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 172 NISGGEGGAVGDAQAKSNEGAIRTVRMINGKTFVLYKDYTYSHKGKMACKNKNRWR 339
+I G + GD AK + + ++ K F+L D ++ + KM +NK+ WR
Sbjct: 243 SIGGPDDTLYGDNSAKLDILQAKLEVLVRSKRFLLVLDDVWNDEAKMELENKDLWR 298
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 163 GDVNISGGEGGAVGDAQA-KSNEGAIRTVRMINGK 264
GDV+ +G +GG GDAQA KS +R +R K
Sbjct: 167 GDVDRAGDDGGGEGDAQATKSTMDGVRRLRRAKEK 201
>11_01_0252 + 1934505-1935032,1936001-1936957
Length = 494
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 127 NMEMTGFDGSATGDVNISGGEGGAVGDAQAKSNEGAIRTVRMINGKTFVLYKDYTYSHKG 306
N M G G +G GG GGA G A + + V I + VL + YS +
Sbjct: 71 NWPMAGGGGGGSG----GGGRGGAGGGGGAPATPELVIPVSSIRYEVLVLVLQFLYSGQA 126
Query: 307 KMA 315
+A
Sbjct: 127 SVA 129
>05_05_0352 +
24328117-24328303,24328451-24328559,24330634-24330692,
24331139-24331220,24331361-24331481,24331751-24332278,
24332724-24332831,24332934-24333131,24334043-24334234,
24336116-24336199,24336385-24336525,24336683-24336748,
24336880-24337047,24337134-24337463,24337568-24337666
Length = 823
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 157 ATGDVNISGGEGGAVGDAQAKSNEGAIRTVRMING 261
A GD ++ GG G G A ++ G R+ +++NG
Sbjct: 16 AGGDGHVEGGGAGGGGGADEDAHRGGERSPKVMNG 50
>05_03_0597 +
16014809-16015120,16015234-16015398,16015497-16015957,
16016057-16016233,16016331-16016679
Length = 487
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 121 DSNMEMTGFDGSATGDVNISGGEGGAVGDAQAKSNEGAIR 240
D+ +T ++G DV + G GG A A GAIR
Sbjct: 394 DTRAVITTYEGKHNHDVPVGRGGGGGRAPAPAPPTSGAIR 433
>12_02_0744 - 22704637-22705341
Length = 234
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 115 EDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQAKSNE 228
EDD + + G ATG + GG GG GD+ ++ E
Sbjct: 47 EDDDDRDADGAAAFATGAADGGGGGGGG-GDSHVRNGE 83
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Frame = +1
Query: 145 FDGSATGDVNISGGEGGAVGD---------AQAKSNEGAIRTVRMINGKTFVLYKDYTYS 297
F+G+ TG+V+ G+ AV D +S + A + RM+ LY Y
Sbjct: 99 FEGNQTGEVDRDAGDNDAVDDLGQMLQDAKEDCESEKEAHKLERMLEDHRTSLYPGYEQG 158
Query: 298 HKGKMACKNKNRWRCSMG 351
HK +W+ G
Sbjct: 159 HKKLDTTLEFLQWKAKNG 176
>10_01_0352 -
3870921-3871272,3871383-3871479,3871541-3871621,
3874854-3875028,3875650-3875661
Length = 238
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 112 GEDDSNMEMTGFDGSATGDVNISGGEGGAVGDA 210
G D + + +G A G + GG G VGDA
Sbjct: 127 GSDPNGVGRRAPEGRAPGCARVEGGSSGTVGDA 159
>05_04_0422 +
21122099-21122194,21122353-21122510,21122651-21122866,
21122965-21123379
Length = 294
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = -3
Query: 309 LSFVTVRVVLVQNKSFSVDHSDCSNGAFVRFSLCIADCSTFTSRNINISSC--RAIKTSH 136
++ V V+ + SV H S A +C A T + + C R+
Sbjct: 86 IATVIAFVMFLDTGGISVVHGSSSRSAAAELGICAAIFLMITHVAMAAAGCCCRSFCIPS 145
Query: 135 FHIRIVLSVISFVIVRAIFIVIPHTLINK 49
R+V ++ S+++ +F+++ H + +
Sbjct: 146 ETARVVCAITSWIVPVIVFVLLLHAAVEE 174
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 154 SATGDVNISGGEGGAVGDAQAKSNEG 231
SA+GDV+ +GG GGA G+ +N+G
Sbjct: 79 SASGDVDPAGG-GGASGEGGGAANDG 103
>04_03_0578 - 17463545-17464417
Length = 290
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Frame = +1
Query: 133 EMTGFDGSATGDV-------NISGGEGGAVGDAQ--AKSNEGAIRTVRMINGKTFVLYKD 285
+ GF+G+ TG+ +++ G + DA+ +S +GA + +M +LY
Sbjct: 95 QYAGFEGNQTGEEEKHADGNDVADDLGQMLQDAKEDCESEKGAHKLNKMFEDHRTLLYPG 154
Query: 286 YTYSHKGKMACKNKNRWRCSMGCKA 360
Y HK RW+ + KA
Sbjct: 155 YEQGHKKLDTTLEFLRWKAGVSDKA 179
>11_01_0271 + 2039100-2041760
Length = 886
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 162 SCRAIKTSHFHIRIVLSVISFVIVRA-IFIVIPHTLINKLWFHFGSDSIVLSLSL 1
SCR+ KTS + I +V +V+ ++ ++A +F P K W H +++ L L
Sbjct: 288 SCRSFKTSIYVIALVGAVLLYIAIQAMVFFSEP----VKDWLHRAGETLQKCLKL 338
>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
Length = 665
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 162 SCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFH 37
SC+ + TS + I + +V+ +V++ +FI + NK H
Sbjct: 471 SCQDVSTSIYVITLAGAVLIYVVIHIVFITLEDEDKNKTSVH 512
>02_05_1323 + 35700147-35701649
Length = 500
Score = 27.5 bits (58), Expect = 6.0
Identities = 26/95 (27%), Positives = 41/95 (43%)
Frame = -3
Query: 348 HAASPAILVLAGHLSFVTVRVVLVQNKSFSVDHSDCSNGAFVRFSLCIADCSTFTSRNIN 169
HAASP +LV + H +LV + H+ SNG ++ C CS ++N
Sbjct: 98 HAASPRVLVESLH-----ALAILVACDA----HAYVSNGLIHAYASCALLCSARRVFDVN 148
Query: 168 ISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPH 64
+ SCR + + + RA+F +PH
Sbjct: 149 V-SCRDVCSWTSLLTAYGRAARLHHARALFDAMPH 182
>12_01_0272 + 1985348-1986036,1986142-1988020
Length = 855
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 162 SCRAIKTSHFHIRIVLSVISFVIVR-AIFIVIPHTLINKLWFHFGSDSIVLSLSL 1
SCR+ KTS + I +V +V+ ++ ++ +FI P K W H +++ L L
Sbjct: 253 SCRSFKTSIYVIALVGAVLLYIAIQFMVFISEP----VKDWLHRAGETLQKCLKL 303
>09_06_0200 +
21539963-21541271,21541912-21542013,21542095-21542291,
21542396-21542603,21542685-21542922,21543010-21543160,
21543538-21543849
Length = 838
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 118 DDSNMEMTGFDGSATGDVNISGGEGGAVGDAQAKSNEGAIRTVRMINGKTF 270
+ SN+ ++ DG NI+GG G N G + VR NG F
Sbjct: 98 ESSNLVVSDADGRVRWTTNITGGAAGNGNTTAVLMNTGNL-VVRSPNGTIF 147
>07_03_0479 + 18564733-18565716
Length = 327
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 181 GGEGGAVGDAQAKSNEGAIRTVRMINGKTFVL 276
GG GG VG+ +++ +GA V +NG+ F++
Sbjct: 279 GGAGGLVGNV-SRAADGASYNVNGVNGRRFMV 309
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 162 SCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINK 49
SCR + TS + I + V+ +V++ IFI + + K
Sbjct: 486 SCRDVTTSIYVIALAGVVLVYVVIHVIFITLDEDMGKK 523
>06_02_0008 -
10552066-10552116,10552224-10552323,10552394-10552449,
10553950-10557180
Length = 1145
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -3
Query: 162 SCRAIKTSHFHIRIVLSVISFVIVR-AIFI-VIPHTL 58
SCRA+K+S + + +VLSV +V + +FI V+P L
Sbjct: 200 SCRALKSSVYILVLVLSVFFYVGIHILVFIRVVPKWL 236
>01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879
Length = 379
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 124 SNMEMTGFDGSATGDVNISGGEGGAVG 204
S+ +M F S G V I GG GG VG
Sbjct: 34 SSSDMESFFFSQPGGVGIGGGGGGVVG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,068,607
Number of Sequences: 37544
Number of extensions: 227267
Number of successful extensions: 953
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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