Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1511
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical pr... 29 1.3
AF067219-15|AAC17023.2| 802|Caenorhabditis elegans Hypothetical... 28 3.1
X72941-1|CAA51446.1| 372|Caenorhabditis elegans Wnt-1 protein p... 27 5.3
AF025463-5|AAB71011.1| 372|Caenorhabditis elegans C. elegans wn... 27 5.3
Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical p... 27 7.0
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 27 7.0
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 7.0
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 27 7.0
DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian str... 27 7.0
AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effe... 27 7.0
AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical ... 27 7.0
AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical ... 27 7.0
AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical ... 27 7.0
U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical pr... 27 9.3
AY246429-1|AAO91836.1| 209|Caenorhabditis elegans homeodomain p... 27 9.3
AY246428-1|AAO91835.1| 209|Caenorhabditis elegans homeodomain p... 27 9.3
AL031621-4|CAA20931.1| 75|Caenorhabditis elegans Hypothetical ... 27 9.3
AF003137-4|AAB93639.2| 209|Caenorhabditis elegans C.elegans hom... 27 9.3
>Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical
protein F07B10.4 protein.
Length = 724
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -3
Query: 231 AFVRFSLCIADCSTFTSRNINISSCR---AIKTSHFHIRIVLSVISFVIVRAIFIVIPHT 61
A V F+ CS T I + S R + KT +HI++ + + +++A+F+V+P T
Sbjct: 598 ATVFFACIFVVCSLATI--IVVQSARDTMSYKTVKYHIQVTVLFLCSCVIQALFVVLPVT 655
Query: 60 LI 55
I
Sbjct: 656 HI 657
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = -3
Query: 225 VRFSLCIADCSTFTSRNINISS-CRAIKTSHFHIRIVLSVISFVIVRAIFIVIP--HTLI 55
V F+ CS T I+ + +++T +H+++V S + ++A F+V+P H L+
Sbjct: 218 VLFAFVFVLCSITTIAIIHSAKDTMSLQTRRYHLQVVKSFLISCGIQAFFVVLPVVHILL 277
Query: 54 NKLWFHF 34
++F F
Sbjct: 278 -CVYFEF 283
>AF067219-15|AAC17023.2| 802|Caenorhabditis elegans Hypothetical
protein R12E2.2 protein.
Length = 802
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 222 ERRRH*NSQNDQRKNFCSVQGLHVQSQRK 308
ER RH N + +R+N ++Q LH + +K
Sbjct: 397 ERSRHSNFEQSRRRNLATIQRLHPKDVQK 425
>X72941-1|CAA51446.1| 372|Caenorhabditis elegans Wnt-1 protein
protein.
Length = 372
Score = 27.5 bits (58), Expect = 5.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -2
Query: 340 IASDSCSCRPSFLCDCTCSPCTEQ 269
I + C+C+ + C+ C PC ++
Sbjct: 342 IVEEKCNCKFIYCCEVRCEPCQKR 365
>AF025463-5|AAB71011.1| 372|Caenorhabditis elegans C. elegans wnt
family protein 1,isoform a protein.
Length = 372
Score = 27.5 bits (58), Expect = 5.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -2
Query: 340 IASDSCSCRPSFLCDCTCSPCTEQ 269
I + C+C+ + C+ C PC ++
Sbjct: 342 IVEEKCNCKFIYCCEVRCEPCQKR 365
>Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 349 PCCIASDSCSCRPSFLCD--CTCSPCTEQKF 263
PC +++C+CR + +C C C Q+F
Sbjct: 536 PCNATAENCACRENGVCSYMCKCDINCSQRF 566
>Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 349 PCCIASDSCSCRPSFLCD--CTCSPCTEQKF 263
PC +++C+CR + +C C C Q+F
Sbjct: 536 PCNATAENCACRENGVCSYMCKCDINCSQRF 566
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -2
Query: 346 CCIASDSCSCRPSFLCDCTCSPC 278
CC C CRP C C C C
Sbjct: 68 CCRPRCCCCCRPKCCCTC-CRTC 89
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -2
Query: 346 CCIASDSCSCRPSFLCDCTCSPC 278
CC C CRP C C C C
Sbjct: 70 CCRPRCCCCCRPKCCCTC-CRTC 91
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -2
Query: 346 CCIASDSCSCRPSFLCDCTCSPC 278
CC C CRP C C C C
Sbjct: 73 CCRPRCCCCCRPKCCCTC-CRTC 94
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -3
Query: 171 NISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLSLSL 1
NI+S A SHF IR L V + IV + PH + K +H +L SL
Sbjct: 2332 NIASALANNRSHFTIRNALIVSNSGIVNSKMEGKPHRVAKKDRYHVKLCDSLLDASL 2388
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
pick c disease)related protein 2 protein.
Length = 1274
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 363 GSLTSHAASPAILVLAGHLSFVTVRVVL 280
GS T PAI++ AG LSF RV++
Sbjct: 1179 GSTTLSGIFPAIMITAGCLSFADSRVLI 1206
>DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian
stromal interaction molecule-1 protein.
Length = 530
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 140 LVLMALQLEMLIFLEVKVEQSAMHKLNRTKAPLEQ 244
L +AL L LIFL V+ +Q A K+N L +
Sbjct: 195 LAFLALLLTSLIFLYVRQKQKAQQKVNELSNKLTE 229
>AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effect
sterile 2 protein.
Length = 773
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 349 PCCIASDSCSCRPSFLCD--CTCSPCTEQKF 263
PC +++C+CR + +C C C Q+F
Sbjct: 536 PCNATAENCACRENGVCSYMCKCDINCSQRF 566
>AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1c protein.
Length = 395
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 140 LVLMALQLEMLIFLEVKVEQSAMHKLNRTKAPLEQ 244
L +AL L LIFL V+ +Q A K+N L +
Sbjct: 195 LAFLALLLTSLIFLYVRQKQKAQQKVNELSNKLTE 229
>AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1a protein.
Length = 530
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 140 LVLMALQLEMLIFLEVKVEQSAMHKLNRTKAPLEQ 244
L +AL L LIFL V+ +Q A K+N L +
Sbjct: 195 LAFLALLLTSLIFLYVRQKQKAQQKVNELSNKLTE 229
>AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1b protein.
Length = 510
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 140 LVLMALQLEMLIFLEVKVEQSAMHKLNRTKAPLEQ 244
L +AL L LIFL V+ +Q A K+N L +
Sbjct: 195 LAFLALLLTSLIFLYVRQKQKAQQKVNELSNKLTE 229
>U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical
protein F01G12.1 protein.
Length = 178
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 66 HTLINKLWFHFGSDSIVL 13
HT+ K+WFH+G D +VL
Sbjct: 116 HTM--KMWFHWGFDEVVL 131
>AY246429-1|AAO91836.1| 209|Caenorhabditis elegans homeodomain
protein CEH-2 protein.
Length = 209
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 124 SNMEMTGFDGSATGDVNISGGEGGAV 201
SN ++G S +GD N++ G GG+V
Sbjct: 69 SNPFISGIGASGSGDQNLNTGAGGSV 94
>AY246428-1|AAO91835.1| 209|Caenorhabditis elegans homeodomain
protein CEH-2 protein.
Length = 209
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 124 SNMEMTGFDGSATGDVNISGGEGGAV 201
SN ++G S +GD N++ G GG+V
Sbjct: 69 SNPFISGIGASGSGDQNLNTGAGGSV 94
>AL031621-4|CAA20931.1| 75|Caenorhabditis elegans Hypothetical
protein F28H6.7 protein.
Length = 75
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 352 IPCCIASDSCSCRPSFLCDCTCSPCTE 272
IPCC+ D C+C +C C+ C E
Sbjct: 45 IPCCLIIDFCACFVE-VCGAVCA-CEE 69
>AF003137-4|AAB93639.2| 209|Caenorhabditis elegans C.elegans
homeobox protein 2 protein.
Length = 209
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 124 SNMEMTGFDGSATGDVNISGGEGGAV 201
SN ++G S +GD N++ G GG+V
Sbjct: 69 SNPFISGIGASGSGDQNLNTGAGGSV 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,716
Number of Sequences: 27780
Number of extensions: 182915
Number of successful extensions: 727
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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