Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1511
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.56 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   0.74 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   2.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 177 NINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLI 55
           N  +S  R  +++  H   ++  +SF IV   +I+I  TL+
Sbjct: 388 NSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLV 428


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 340 IASDSCSCRPSFLCDCTCSPCTE 272
           + S  C C+P +  D     CTE
Sbjct: 242 LPSGGCHCKPGYQADVEKQECTE 264


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 457 CICRGGWLSNXKQRDCV 407
           C+CR G+L N K++ CV
Sbjct: 71  CVCRLGYLRN-KKKVCV 86


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 457 CICRGGWLSNXKQRDCV 407
           C+CR G+L N K++ CV
Sbjct: 71  CVCRLGYLRN-KKKVCV 86


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 281 LYRTKVFPLIILTVLM 234
           +Y T +FP  +LT+L+
Sbjct: 235 VYFTSLFPYALLTILL 250


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 281 LYRTKVFPLIILTVLM 234
           +Y T +FP  +LT+L+
Sbjct: 288 VYFTSLFPYALLTILL 303


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +2

Query: 8   RERTMLSLPKWNQSL 52
           R++  ++LPKW   +
Sbjct: 196 RDKVFITLPKWKDGI 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,733
Number of Sequences: 438
Number of extensions: 2026
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)