Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1510
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241...    29   4.9  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   8.6  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   8.6  

>04_04_0397 -
           24921892-24922947,24923486-24923734,24923807-24924157,
           24924244-24924331,24924466-24924563,24925141-24925362,
           24925490-24925585,24926410-24926481,24927156-24927305
          Length = 793

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -2

Query: 716 PGLVKISRVESN*AAGSTPGGALPVNFL*VSALQPYSPRSPKSLVSRKLPAEP 558
           PG   ++R   N   G    G  P+N      + P  P +P    SRK+P  P
Sbjct: 463 PGATGLTRNGRNAPGGPLSPGGFPMNRPGTGGMMPGMPGTPGMPGSRKMPGMP 515


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 360 INHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPF 259
           I H L +LK  KI P   +I  C +YS    S F
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGF 852


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 57  RNNFSIRYWSWNYRGC 10
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,027,214
Number of Sequences: 37544
Number of extensions: 436721
Number of successful extensions: 1015
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)