Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1509
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.056
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   0.91 
UniRef50_Q01T33 Cluster: NHL repeat containing protein precursor...    34   2.8  
UniRef50_Q8IKD7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.9 bits (89), Expect = 0.056
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = +3

Query: 72  RLSPLSFWPDLLSGSRFRSAGRFCEALPLLGPVLA 176
           +  P+ F       SRFRS GRFCEAL LLG VLA
Sbjct: 71  KTQPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLA 105


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.9 bits (79), Expect = 0.91
 Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
 Frame = +3

Query: 51  HRDTLTRRLSPLSFWPDLLSGSRFRSAGRFCEAL-----------PLLGPVLATLHVKEK 197
           H      R  PLSF PDLLSGSRFR+   + E L           PLL  +LAT    E 
Sbjct: 386 HSTENEHRCCPLSFSPDLLSGSRFRTGAEY-EMLGLGTIAGNIVSPLLSALLATWSPLEN 444

Query: 198 LKKPL 212
            ++PL
Sbjct: 445 PEEPL 449


>UniRef50_Q01T33 Cluster: NHL repeat containing protein precursor;
           n=1; Solibacter usitatus Ellin6076|Rep: NHL repeat
           containing protein precursor - Solibacter usitatus
           (strain Ellin6076)
          Length = 981

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -1

Query: 271 IGSFAVLQMTLFFPTYAVALRGFFSFSLT-WSVANTGPSNGS 149
           IG+FA+ +MT    T   A    FSF+ T W++ N+GP+ G+
Sbjct: 729 IGAFAIAKMTASNVTQETASGSVFSFTPTEWTILNSGPAFGA 770


>UniRef50_Q8IKD7 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 2381

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 287  LKL*SYRVICCITNDSFFPYLCCSLERLFQLLL 189
            L L  Y ++ C  ND+  PY+C  L +LF  +L
Sbjct: 1275 LHLKGYFILLCFVNDTIIPYVCSELIQLFYYIL 1307


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,901,145
Number of Sequences: 1657284
Number of extensions: 10132960
Number of successful extensions: 20514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20514
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)