Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1509
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-14|AAY44014.1|  215|Caenorhabditis elegans Hypothetical p...    29   2.3  
U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    27   9.3  

>U00033-14|AAY44014.1|  215|Caenorhabditis elegans Hypothetical
           protein F37C12.18 protein.
          Length = 215

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 562 PHTLPAFDLVSKTLKQKYSTSFEHCTLTSFVRPIRVVRNTSSK 434
           PH LP   L+     Q   T+FE  T  S    +R+V N  SK
Sbjct: 77  PHVLPRMALIRVYFMQNLFTTFELATDRSLQTLLRIVLNAISK 119


>U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical
           protein C18H2.4 protein.
          Length = 934

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 568 RLPHTLPAFDLVSKTLKQKYSTSFEHCTLTSFVRPIRVVRNTSSK 434
           +L HT+  +    + + Q Y  SFE C  T   +P   + N+S K
Sbjct: 349 KLVHTIEEYTDNGQAILQMYQKSFEKC-YTGSAQPANSIPNSSDK 392


>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 425 YRNRTTTIAQLKQQL-ARNYVQTRLVSG*YTRVLTRLEKMKHYSKLILK 282
           Y N +TTI   K  +   + +Q  +     TRV ++L ++++YS L+LK
Sbjct: 410 YDNSSTTIISKKDIIDLEDDLQKMMKKLQDTRVFSKLPRIRYYSDLVLK 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,325
Number of Sequences: 27780
Number of extensions: 253584
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)