Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1507
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545... 35 0.078
08_02_1271 - 25762750-25764276 32 0.55
05_06_0260 + 26736631-26736771,26736850-26736981,26737066-267372... 31 1.3
04_03_0463 - 16200690-16200986,16202010-16202258,16202562-162026... 31 1.3
11_06_0102 + 20112731-20112928,20113314-20113514,20113606-201136... 30 1.7
05_01_0299 - 2322204-2322734,2324089-2326164 29 2.9
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 28 6.8
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 28 6.8
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 28 6.8
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 28 6.8
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 28 9.0
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 28 9.0
06_03_0588 + 22567820-22570802,22570917-22571269 28 9.0
>07_01_0714 -
5451246-5451408,5453401-5453534,5453608-5453796,
5454313-5454825,5455815-5456856,5457283-5457380,
5458224-5458451
Length = 788
Score = 34.7 bits (76), Expect = 0.078
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 738 LIALTTVLTICLIAGGARSSMSCCQFSLANCRVVSANSL 622
L+ VL+ C AGG R++ C Q SL +C ++ A L
Sbjct: 342 LLVKRHVLSSCAAAGGLRAAAECVQISLGHCSLLEARGL 380
>08_02_1271 - 25762750-25764276
Length = 508
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 741 LLIALTTVLTICLIAGGARSSMSCCQFSLANCRVVSANSLFP 616
LL+A VLT CL+A + + C C V +A FP
Sbjct: 11 LLLAAAAVLTQCLLAAAVNTPVVQCASGTTKCTVTNAFGAFP 52
>05_06_0260 +
26736631-26736771,26736850-26736981,26737066-26737248,
26737344-26737370,26737482-26737689,26737863-26737944,
26738097-26738205,26738324-26738443,26738567-26738884
Length = 439
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -1
Query: 291 NVSFNPLP--SMLMSSRCTGSVEGTSSSGIPFVNSGRLFSICSLMHCSRFSLENSQASMY 118
N S N +P S S+ G + T +G F+ CS+ SLEN +M
Sbjct: 323 NSSSNEIPCGSKNGSAVTVGEISYTDITGTSASERAVTFACSEAAPCSKLSLENVNITMA 382
Query: 117 GGRYASS 97
GG+ AS+
Sbjct: 383 GGQNASA 389
>04_03_0463 -
16200690-16200986,16202010-16202258,16202562-16202697,
16203150-16203368,16204137-16204515,16205010-16205253
Length = 507
Score = 30.7 bits (66), Expect = 1.3
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 2/154 (1%)
Frame = +2
Query: 20 QESAVSRTMMLIALFLFAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLPEF 199
++SA++R +I + A + + D+Y I+ C NE +++ E LPE+
Sbjct: 240 EDSALAR---MIFTKIIAFIILMDDTYDSYAT--IQECRKLNEAIQRW-DESATAFLPEY 293
Query: 200 TKGIPE--LDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGNF 373
K L +H++D DG ++ TK L +L+E + + N+
Sbjct: 294 IKKFYSALLKTFKEFEIHVED---DGQ-YRIDHTKKAFQNLSAYYLQEAEWSYQ----NY 345
Query: 374 KLAFISNMSLTAEYEADGKLLILQIKGKGDALIN 475
K +F ++L+ L + G+GDAL N
Sbjct: 346 KPSFEEQVALSTVTSTVPLLCVSTTVGRGDALTN 379
>11_06_0102 +
20112731-20112928,20113314-20113514,20113606-20113695,
20114269-20114457,20115375-20115387,20115824-20115990,
20117334-20117522,20118940-20119053,20120912-20121010,
20122368-20122490,20122579-20122701,20123179-20123277,
20124786-20124842,20125136-20125182,20125296-20125439,
20125540-20125717,20126318-20126398,20126480-20126563,
20126624-20126629
Length = 733
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 554 GTPSYKYKIEKTTFDLKNLFNGNKELADTTL--QFANENWQQLMDDLAPPAIKQI 712
GTP + +E+ D + E AD + QFA EN Q D PPA+ ++
Sbjct: 33 GTPEDRANVERVRRDFTDHRLRRPESADLLMRMQFARENNHQRRGDRIPPAVNKL 87
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -1
Query: 441 KMRSFPSASYSAVKLMLLM----KANLKFPWSPSNLSLNSFR*LPFKPCINALVNVSFNP 274
K RSF ++ S++K + A++K P P +LS LP P +A ++ + NP
Sbjct: 404 KCRSFSDSTTSSLKASSKVGKGFSASMKGPEVPPDLSFTGAA-LPSNPSFDAKLSSNLNP 462
Query: 273 LPS 265
LP+
Sbjct: 463 LPA 465
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 362 HGNFKLAFISNMSLTAEYEADGKLLILQIKGKGDALINCVNVDVEIESKLNQVKDNNGKD 541
+G ++AF + L A E K L+ + GKG + V VEI L ++NN D
Sbjct: 88 YGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKGADFVRAVKEIVEIYDSLKN-ENNNKSD 146
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 738 LIALTTVLTICLIAGGARSSMSCCQFSLANCRVVSANSL 622
L+ L C+ AGG R++ C Q SL + ++ L
Sbjct: 325 LLVKRHALAACVAAGGLRAAAECIQISLGHSSLLETRGL 363
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 68 FAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLP 193
FA H++N DAY P + C +N ++ + + ++I K +P
Sbjct: 259 FAQHLYNDKRTDAYFPIKVWVCVSTNFDVLR-LTQEILKCIP 299
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +2
Query: 560 PSYKYKIEKTTF----DLKNLFNGNKELADTTLQ 649
P YK+K+E+T F + + FNG +++ +LQ
Sbjct: 187 PEYKFKVERTNFFPQPKVNSAFNGKRKMLRKSLQ 220
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 89 TNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLPEFTKGIPEL 220
++ADDA P Y+E + +C+KE I++ P + + EL
Sbjct: 641 SSADDALRPRYMECLDRMANIAIRCLKEDIDER-PTMAEALEEL 683
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 491 VEIESKLNQVKDNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKE 628
V + + + D+NGK+ G S K++ E +F K +F+ ++E
Sbjct: 193 VRVRKTMAETHDSNGKESANDGIKSDKFETENFSFLPKLIFDRHEE 238
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +2
Query: 242 VHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGNFKLAFISNMSLTAEYEA 421
V L+++N+DGN L + +++ H + LK L + HG + SL+ +
Sbjct: 537 VQLNELNLDGNNLSGSIPESIHH---CAQLKTLNLAHNSLHGTIPVHIFKIFSLSEHLDL 593
Query: 422 DGKLLILQIKGKGDALIN 475
L I + LIN
Sbjct: 594 SHNYLSGGIPQEVGNLIN 611
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,838,535
Number of Sequences: 37544
Number of extensions: 384616
Number of successful extensions: 1027
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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