Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1506
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.69 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.7  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   6.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 609 WEHHFRCHGP 580
           WEHHF+C  P
Sbjct: 430 WEHHFQCRYP 439


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 217 SLCPLNV---CICLKVIGSQI*MLDDSS 143
           S CP  +   CIC++ I     ML+DS+
Sbjct: 478 SRCPPEIHKSCICVRFIAEHTKMLEDST 505


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 217 SLCPLNV---CICLKVIGSQI*MLDDSS 143
           S CP  +   CIC++ I     ML+DS+
Sbjct: 478 SRCPPEIHKSCICVRFIAEHTKMLEDST 505


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +3

Query: 51  GTLTYKTHSNFLKGGITSLAISTDSKYLASSDESSNIQI 167
           G   Y T  NF+ GGI       +       DES N  I
Sbjct: 60  GPKNYTTPVNFVAGGIQQAGKPKEETDDKDDDESDNENI 98


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -3

Query: 193 ICLKVIGSQI*MLDDSSDDARYFESVDIAKLVMPPFKKFEWV 68
           +C+K IG+   ++DD ++     +  ++   +    KKF  V
Sbjct: 32  VCMKEIGTAQQIIDDINEGKINMDDENVLLFIECTMKKFNVV 73


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -2

Query: 209 SFKCVYMLKGYWVPNLNVG 153
           +F+CV++L  ++  + N+G
Sbjct: 48  TFRCVFVLDPWFAGSTNIG 66


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 436 SSTIFHILIVLSLPPDVIALSLV 368
           S T+F +L+   +PP  +A+ L+
Sbjct: 290 SLTVFFLLLAEIIPPTSLAIPLL 312



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 99  TSLAISTDSKYLASSDESSNIQIWDPITFKHIH 197
           TSLAI    KYL  +     + IW  +   ++H
Sbjct: 305 TSLAIPLLGKYLLFTMILVTLSIWITVCVLNVH 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,836
Number of Sequences: 438
Number of extensions: 4749
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)