Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1505
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   3.6  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.4  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    25   8.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.4  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.4  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 132 TCLKQTDSKISTRRFGLPSLYHSSLAIKYLFLNRTFTIKRNASATVRR 275
           T  + T S I   +   PS+  SS AIK +  +++F++ ++ S  + +
Sbjct: 491 TSAETTSSAIRKVQSKYPSMCGSSPAIKLILFSKSFSVLQSTSEKIEQ 538


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 287 FWKLHSTRQSIKRDQTPNRFNTDQIY-YC*KKTKQTSL--LNIFLIYTY 424
           FW LHS +Q I +  +    N D +  +C   +   ++  LN ++ +TY
Sbjct: 373 FWSLHSKKQDILKLYSDLGINDDLVVPFCEAASSLDAIDDLNDYIHFTY 421


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 301 MQFPEIHP*RLTVAEAFLLIVNVR 230
           M +PE HP R  +++AF  I+ +R
Sbjct: 196 MLYPEEHPERYKLSKAFANILGIR 219


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -1

Query: 489 YSYACSKERLFQYSKQTLQFYLYV*IRNMFNKEVCFVFF*Q*YIWSV 349
           +SY CS   +F Y   TLQFY    +R  F K V  +F     IW V
Sbjct: 771 FSY-CSL--IFYYQATTLQFYNLPKVRPFFEKGVT-LFSANTAIWEV 813


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 332 TPNRFNTDQIYYC*KKTKQTSLLNIFLIYTYK*NWSVCLEY 454
           TP+    D+++      K +  L ++LI+++   W V +E+
Sbjct: 304 TPSEQFLDKVFISLLSAKNSCSLKMWLIHSFNKGWPVKIEF 344


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 215 ISFFKPNVHDQKKRFRDRKTSRMYFWKLHS 304
           I FF+  V + +   RD      YFW++H+
Sbjct: 150 IPFFQRVVQEVRTISRDIAEKLQYFWEIHA 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,476
Number of Sequences: 5004
Number of extensions: 46783
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)