Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1505
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0129 - 1954470-1955129,1956285-1956371,1956475-1956663,195...    27   8.4  
04_03_0684 - 18670697-18670933,18671003-18671102,18671214-186712...    27   8.4  

>09_01_0129 -
           1954470-1955129,1956285-1956371,1956475-1956663,
           1956772-1956900,1957386-1957472,1957572-1958036,
           1959844-1959923,1961295-1961358,1961444-1961455
          Length = 590

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 476 VVKSGYFNIPNRHSNFIYMYR*EICLIRKFVLFSFNSNIF 357
           ++ SG+F +PN   N ++ Y        K+ L  F  N F
Sbjct: 466 MLTSGFFQLPNSLPNIVWKYPMYYISFHKYALQGFYKNEF 505


>04_03_0684 -
           18670697-18670933,18671003-18671102,18671214-18671266,
           18671664-18671810,18671901-18672031,18673064-18673088,
           18673201-18673305,18673941-18674054,18674900-18674992,
           18675101-18675193,18675951-18676057,18676442-18676490,
           18677140-18677253,18677728-18677787,18677887-18677955,
           18679154-18679255,18679338-18679366,18679450-18679732,
           18680399-18680752
          Length = 754

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 238 SRSKETLPRP*DVKDVFLETAFDEAIDKTRPDSESLQY*PNILLLKENKTNFLIKHISYL 417
           +RS+E +     VKD     AF+E    T P    L +   +  L +     L+KHI+Y+
Sbjct: 252 NRSQEDINFKRSVKDAL---AFEEKFFSTLPAYHGLTHCCGVPQLAKKLNTILLKHITYM 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,751,247
Number of Sequences: 37544
Number of extensions: 250505
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)