Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1505
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.14 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   4.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 357 WSVLKRFGVWSRFI--DCLVECSFQKYILD 274
           W+++   GVW RF+    L  CSF  Y+ D
Sbjct: 176 WALMPVMGVWGRFVPEGFLTSCSFD-YLTD 204


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +2

Query: 236 VHDQKKRFRDRKTSRMYFWKLHSTRQSIKRDQTPNR 343
           +H++KK+  + +TSR  + +     Q   +++   R
Sbjct: 255 LHNEKKKLLEERTSRKRYSRSREREQKSYKNENSYR 290


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 270 RRQGCISGNCIRRGNR 317
           RRQ   +GNC +RG +
Sbjct: 442 RRQREAAGNCRKRGEK 457


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/32 (25%), Positives = 13/32 (40%)
 Frame = -3

Query: 193 YNDGNPNRRVDIFESVCFRHVGRYTGQTKCIF 98
           YN+ + N  V I       H G+   +   I+
Sbjct: 110 YNNADGNYEVTIMTKAILHHTGKVVWKPPAIY 141


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 227 KPNVHDQKKRFRDRKTSRMYFWKLHSTRQSIKRDQTP 337
           +P     +K F  +KT    F K+ +T  ++  + TP
Sbjct: 329 RPAFWSLRKAFARKKTDYSSFGKILATEPTLFSNVTP 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,421
Number of Sequences: 438
Number of extensions: 3213
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)