Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1504
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.11 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   7.5  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.9  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   9.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.9  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   9.9  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   9.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 29   TDTYTKIVKE---GENEITQTITVVTTKEVISPEKIKITVET 145
            T  + +IV E   G +E ++T+T++T +EV       I VET
Sbjct: 965  TTYHIRIVAENEIGSSEPSETVTIITAEEVPGGPPTSIRVET 1006


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 413 HYFPYPKNA*QLLNPWN*CLMGKTYLGDLNRHLQRTNSSCRQS 285
           ++ P  K+A  +L PW   L    ++  L +H+      C Q+
Sbjct: 574 NWHPSDKSAKPMLKPWQRVLPDGVFVAFLLKHIVPKLQLCMQN 616



 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 321 SLAADELLMSPVLDESF 271
           ++ +DELL  P + E+F
Sbjct: 682 NMLSDELLAQPTIKENF 698


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 40  YENSQRR*K*NYTNYNCGDNQRGDQSRENQNNGRNYDS 153
           + N+Q     N  + N G+N      + N N+ RN  S
Sbjct: 364 WRNNQPSTSNNRWHNNNGNNSNNHWRKNNPNDNRNNTS 401


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 417 FITVTTTDKLVPAVLSHRLRILHDQILAS 503
           F+TV+   K +  + + +L +LH  I  S
Sbjct: 228 FLTVSKIKKHIDGMAASKLNVLHWHITDS 256


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 359 CLMGKTYLGDLNRHLQ 312
           CL+  +  G+LNRH++
Sbjct: 111 CLLRFSQSGNLNRHMR 126


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 359 CLMGKTYLGDLNRHLQ 312
           CL+  +  G+LNRH++
Sbjct: 367 CLLRFSQSGNLNRHMR 382


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 381 LLRIFGVRKVVVFITV 428
           LL +FGV  VV+ IT+
Sbjct: 527 LLLMFGVSFVVIVITI 542


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 381 LLRIFGVRKVVVFITV 428
           LL +FGV  VV+ IT+
Sbjct: 252 LLLMFGVSFVVIVITI 267


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,050
Number of Sequences: 336
Number of extensions: 2497
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)