Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1504
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0285 - 17296164-17296203,17296406-17296524,17296572-172967...    30   1.5  
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    29   2.0  
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115...    29   2.0  
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     29   3.5  
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704...    27   8.1  
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932...    27   8.1  
02_01_0074 + 519401-519512,519513-519548,519647-519706,519785-51...    27   8.1  

>02_03_0285 -
           17296164-17296203,17296406-17296524,17296572-17296742,
           17298878-17298985,17299783-17299905,17300057-17300143,
           17300765-17300884
          Length = 255

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 133 YFDFLWTDHLFGCHHSYSL-CNFIFTFF 53
           ++ +L   H   CHHSY + CN +F+ F
Sbjct: 21  WWGYLSVKHFLTCHHSYKIQCNKVFSTF 48


>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 130 FDFLWTDHLFGCHHSYSLCNFIFTFFDYFRICIRFSGNFAY 8
           +DF+    LFG  HS S  +F  ++ D  RI +  +G   Y
Sbjct: 573 YDFIPNGSLFGVLHSGSSSDFSLSWDDCLRIAVEAAGALCY 613


>01_06_0872 +
           32609792-32610178,32611262-32611387,32611477-32611550,
           32611944-32612013,32612088-32612143,32612236-32612307,
           32612384-32612478,32612660-32612726,32612809-32612938,
           32613135-32613350,32613461-32613591,32614044-32614218,
           32614292-32614382,32614653-32614810,32615059-32615247,
           32615551-32615564,32616003-32616228
          Length = 758

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 398 GTESSGIYYSDDDGQASPSSTKSQIAHSPR 487
           G  +  I   +DDG ASP   K Q+ HSP+
Sbjct: 108 GGSAEKIGGGEDDGNASPVPDKVQVGHSPQ 137


>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 11   GEITTET---DTYTKIVKEGENEITQTITVVTTKEVISPEKIKITVETTTV 154
            GE T E    +T T     G+  + +T    TT EV + E  + TVE TTV
Sbjct: 1078 GETTPEVHVEETTTAEESVGDKAVDETTKGETTAEVYAEESTEKTVEDTTV 1128


>11_01_0800 -
           7047425-7048253,7048340-7048927,7049050-7049268,
           7049398-7049518,7050593-7050983
          Length = 715

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 5   PVGEITTETDTYTKIVKEGENEI-TQTITVVTTKEVISPEKIKITVETTTVSKGSDGV 175
           P  E+   T+   KI++  +  + T+T+  VT+  + SP+ +   ++T   ++  DG+
Sbjct: 367 PEEELQRATNIALKILRAADRWVATRTLKAVTSHPIGSPQLVDYCIKTLGGTRTDDGM 424


>06_03_1085 +
           27491735-27492754,27492854-27492978,27493088-27493232,
           27493328-27493591
          Length = 517

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 17  ITTETDTYTKIVKEGENEITQTITVVTTKEVISPEKIKITVETTTVSK 160
           + +E  +YT IVK+G+   +    V  +     P K+ +TVE  T  K
Sbjct: 453 VPSEEGSYTVIVKKGKKMGSSEAAVRNSFRAGEPGKVVLTVENLTHRK 500


>02_01_0074 +
           519401-519512,519513-519548,519647-519706,519785-519877,
           519968-520033,520146-520223,520300-520407,520478-520554,
           520632-520706,520792-520799,520981-521098,521199-521625,
           521627-521661
          Length = 430

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 11  GEITTETDTYTKIVKEGENEITQTITVV-TTKEVISPE 121
           GE+  ET  Y K VK   N+  +TIT    T EVI  E
Sbjct: 375 GEVIRETFKYNKYVKSDCNKKEETITSERKTNEVIGTE 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,458,732
Number of Sequences: 37544
Number of extensions: 228431
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)