Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1504
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin prote...    28   5.5  
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote...    28   5.5  
U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin prote...    28   5.5  
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote...    28   5.5  
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin pro...    28   5.5  
Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical p...    27   9.5  

>U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin protein
           1, isoform a protein.
          Length = 953

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 416 IYYSDDDGQASPSSTKSQIAHSPRSNLS 499
           +Y +DDD  +SP S  S  + SPR +L+
Sbjct: 381 LYSTDDDDDSSPESRPSTRSTSPRHSLA 408


>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
           1, isoform b protein.
          Length = 1028

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 416 IYYSDDDGQASPSSTKSQIAHSPRSNLS 499
           +Y +DDD  +SP S  S  + SPR +L+
Sbjct: 456 LYSTDDDDDSSPESRPSTRSTSPRHSLA 483


>U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin protein
           1, isoform c protein.
          Length = 962

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 416 IYYSDDDGQASPSSTKSQIAHSPRSNLS 499
           +Y +DDD  +SP S  S  + SPR +L+
Sbjct: 390 LYSTDDDDDSSPESRPSTRSTSPRHSLA 417


>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
           1, isoform d protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 416 IYYSDDDGQASPSSTKSQIAHSPRSNLS 499
           +Y +DDD  +SP S  S  + SPR +L+
Sbjct: 534 LYSTDDDDDSSPESRPSTRSTSPRHSLA 561


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = -2

Query: 142 FDRYFDFLWTDHLFG-CHHSYSLCN--FIFTF-FDYFRICIRFS 23
           F R+  F+ T HLF  C     LC+  F+++F F+YF IC R S
Sbjct: 95  FFRFGPFV-TAHLFNICCTLAILCSMSFLYSFWFNYFTICYRIS 137


>AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin
           protein.
          Length = 953

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 416 IYYSDDDGQASPSSTKSQIAHSPRSNLS 499
           +Y +DDD  +SP S  S  + SPR +L+
Sbjct: 381 LYSTDDDDDSSPESRPSTRSTSPRHSLA 408


>Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical
           protein C04C11.2 protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/53 (41%), Positives = 31/53 (58%)
 Frame = +2

Query: 14  EITTETDTYTKIVKEGENEITQTITVVTTKEVISPEKIKITVETTTVSKGSDG 172
           E +  T T   IV+   NE  +  T+V+T EVI     K T++TTTV+K +DG
Sbjct: 514 EHSPATPTVEPIVETIVNENGEE-TIVST-EVIEHGDTK-TIKTTTVTKHADG 563


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 70  NYTNYNCGDNQRGDQSRENQNNGRNYDSQ 156
           +Y     G N+ GDQ   N N G NY S+
Sbjct: 306 SYGRNRGGGNEGGDQWGSNNNGGDNYGSE 334


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 70  NYTNYNCGDNQRGDQSRENQNNGRNYDSQ 156
           +Y     G N+ GDQ   N N G NY S+
Sbjct: 306 SYGRNRGGGNEGGDQWGSNNNGGDNYGSE 334


>Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical
           protein T04A8.15 protein.
          Length = 718

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = +2

Query: 299 RSSSAASDDLDHPGTXXXXXXXXXXXRAATHFWGTESSGIYYSDDDGQASPSSTKSQIA 475
           ++ S  SDDLD               R     WG +       DDD  AS +S K  ++
Sbjct: 580 KNVSNVSDDLDEDNDGDKTLNISNDEREVGKIWGDDVGDDEEDDDDMSASSTSGKHDLS 638


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,217
Number of Sequences: 27780
Number of extensions: 216043
Number of successful extensions: 579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)