Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1502
(632 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 31 0.52
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 31 0.52
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 31 0.52
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 31 0.52
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 31 0.52
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 29 3.7
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 29 3.7
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 29 3.7
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical ... 28 6.4
AF016417-3|AAB65281.1| 457|Caenorhabditis elegans Hypothetical ... 28 6.4
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 27 8.4
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 8.4
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 32 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 187
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 32 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 187
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 32 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 187
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 32 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 187
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 206
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 32 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 187
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
protein 19,isoform a protein.
Length = 1783
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +2
Query: 86 LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 259
L ++ E D + S S++ + + CD ++D G++++R N Y++ +C
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353
Query: 260 LLDLN-FKHVIESSFD 304
L +N F VI +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369
>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
protein 19,isoform b protein.
Length = 1877
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +2
Query: 86 LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 259
L ++ E D + S S++ + + CD ++D G++++R N Y++ +C
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353
Query: 260 LLDLN-FKHVIESSFD 304
L +N F VI +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369
>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
calcium channelalpha 1 subunit protein.
Length = 1783
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +2
Query: 86 LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 259
L ++ E D + S S++ + + CD ++D G++++R N Y++ +C
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353
Query: 260 LLDLN-FKHVIESSFD 304
L +N F VI +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 IESSFDKNHIVAKLCDATRAKEWQT 361
+ES++DK H + + C T + +W T
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLT 155
>AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical
protein Y116F11B.6 protein.
Length = 345
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 92 KTQIDENVSDNIKSMSEKLKRLECDNLTDS-VEIYGIHDNRLNNKKI 229
K +I E+V +NIK KLK++E NL +S E+ H LN K++
Sbjct: 219 KIRIIEDV-ENIKKQDVKLKKIE-KNLKESRKELKEAHQEYLNRKEL 263
>AF016417-3|AAB65281.1| 457|Caenorhabditis elegans Hypothetical
protein F17A9.4 protein.
Length = 457
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 161 CDNLTDSVEIYGIHDNRLNNKKIRNYYLK 247
CDNLT S +I G N N K +N +LK
Sbjct: 7 CDNLTVSSKILGEQLNFRNGKTAQNRFLK 35
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 236 YYLKKICILLDLNFKHVIESSFDKNHIVAK 325
Y ++KI +LD+++ E+S D + I+AK
Sbjct: 318 YCIQKIVFILDIDYSGGFETSIDVSTIIAK 347
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 236 YYLKKICILLDLNFKHVIESSFDKNHIVAK 325
Y ++KI +LD+++ E+S D + I+AK
Sbjct: 318 YCIQKIVFILDIDYSGGFETSIDVSTIIAK 347
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 236 YYLKKICILLDLNFKHVIESSFDKNHIVAK 325
Y ++KI +LD+++ E+S D + I+AK
Sbjct: 318 YCIQKIVFILDIDYSGGFETSIDVSTIIAK 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,678
Number of Sequences: 27780
Number of extensions: 234029
Number of successful extensions: 803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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