Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1501
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 29 0.55
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 28 1.3
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 27 1.7
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.2
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 27 2.2
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 27 2.2
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 27 2.2
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 27 2.9
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 26 5.1
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.7
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 25 8.9
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 29.1 bits (62), Expect = 0.55
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -1
Query: 395 WGFSSSFFFNFITDLINFFVYFIPININ-----VAFLACNV*KNDSTSKSNSCYFSNL 237
W F SFF FIT+ I F +I + N + FL + K + + N+ Y SNL
Sbjct: 384 WNFLISFFTPFITNSIGFKYGYIFASCNLTGAAIIFLFVHETKGRTLEEINTMYASNL 441
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 398 IWGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 288
+WGF SFF FIT+ I F +I F ACN+
Sbjct: 413 LWGFLISFFTPFITNSIGFKYGYI-------FAACNL 442
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 1.7
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = -1
Query: 395 WGFSSSFFFNFITDLINF-FVY-FIPININVA---FLACNV*KNDSTSKSNSCYFSNLHR 231
W F SFF FI++ I F + Y F N+ A FL K + + N Y SN+
Sbjct: 416 WNFMISFFTPFISNSIGFKYGYVFAACNLCAAIIIFLFAKETKGLTLEEINQLYLSNIKP 475
Query: 230 YKT 222
+ T
Sbjct: 476 WNT 478
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 374 FFNFITDLINFFVYFIPININVAFLA 297
FFN + N F+ F PI I + F+A
Sbjct: 133 FFNILLRSFNLFIIFSPIIITLPFIA 158
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -1
Query: 398 IWGFSSSFFFNFITDLINFFVYFIPININ-----VAFLACNV*KNDSTSKSNSCYFSN 240
+W F SFF FIT+ I F +I + N V FL + K + + N Y S+
Sbjct: 413 LWNFLISFFTPFITNSIGFKYGYIFASCNLCASIVTFLFAHESKGLTLEEINELYLSD 470
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 81 PKNEDASEEAKKIVDDAKNF 140
P ++A EEAK I ++AKNF
Sbjct: 154 PITQEAVEEAKPITEEAKNF 173
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 398 IWGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 288
+WGF +FF FI+D I F +I F ACN+
Sbjct: 413 LWGFLITFFTPFISDSIGFKYGYI-------FAACNL 442
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 305 FLACNV*KNDSTSKSNSCYFSNLHRYKTSY 216
+L NV +ND + K NS + R+K+SY
Sbjct: 322 YLGLNVVQNDDSRKKNSTLQTQNMRFKSSY 351
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 398 IWGFSSSFFFNFITDLINFFVYFIPI 321
IWG FFN + + F+V PI
Sbjct: 480 IWGSCIGLFFNILCLMAQFYVSLFPI 505
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +3
Query: 297 SQKGYIDINWDKINKKVDKISDKIEKEATGKSPDWFEKVERF 422
++ Y+D D +N+ + I + K+ + D++EK++ F
Sbjct: 22 NRDSYLDSQSDPLNQNLYNIETENVKDLNIEDVDYYEKLQNF 63
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 75 AKPKNEDASEEAKKIVDD-AKNFIERAIAD 161
+KP NED E+ K I +D +K E++ +D
Sbjct: 227 SKPSNEDNVEDKKDITNDSSKETAEKSSSD 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,328
Number of Sequences: 5004
Number of extensions: 36651
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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