Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1499
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine re...    31   0.57 
AF047659-15|AAC04426.1|  493|Caenorhabditis elegans Hypothetical...    28   7.0  

>AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform b protein.
          Length = 341

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -2

Query: 279 HTTSLL--AFPPKSPFAVEIGKIPTYPRRCYLSL*RNFIIEWRTLENAKE 136
           HT+S+L  AFP   P A+ I  +PT+ +RC   L  NF I+     NAKE
Sbjct: 282 HTSSVLVSAFPFFDPTAI-IFFVPTFRKRCKELLCFNFPIKSAANSNAKE 330


>AF047659-15|AAC04426.1|  493|Caenorhabditis elegans Hypothetical
           protein K07H8.1 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -2

Query: 210 YPRRCYLSL*RNFIIEWRTLENAKERNSFILLVY 109
           +P+  YL++ RN I+EW+++ + +   S   L++
Sbjct: 296 FPKLEYLNIKRNSIVEWKSVNSIRSLKSLKRLLF 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,377
Number of Sequences: 27780
Number of extensions: 281767
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)