Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1496
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    27   2.4  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    27   2.4  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   2.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   7.4  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   9.8  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    25   9.8  

>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +3

Query: 600 RELLSTVSKNESLFHIFQYFCN 665
           ++L+ST+  ++SLF +F ++C+
Sbjct: 185 KDLISTILSDKSLFDLFGFYCH 206


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 272 MLQTDFFFQNIPWIRPRFTSE*VNHFIESLKYHHSRNKN 388
           MLQ    F+N  ++      E  + FIESL++H+  N++
Sbjct: 19  MLQAGAVFENCTFVNGDVLLEIPSFFIESLQFHYLINQS 57


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -3

Query: 164 QVFITDS-VISHHFSSPEKELDGT 96
           ++F T+S VI   FSSP K+LDGT
Sbjct: 71  EIFPTNSKVIVESFSSPLKKLDGT 94


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = -2

Query: 267 DSYYDIKKKNTTSLVFVFVKRITSITAYLGQI*STGLYYR*CHFSSLLITRKGAGRDILQ 88
           DS +D K+K  +    +F++ ++SI   +G+    G          +L         IL 
Sbjct: 600 DSNHDEKQKCFSLREILFLRCLSSIAKVVGEKMGKGW--------KILFETFDKADIILN 651

Query: 87  HSESTKHLSRLSSNRVTEED 28
            S ++KHLS  S NRV   +
Sbjct: 652 RSPTSKHLSTSSLNRVNSSN 671


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 227 WCSFLSKESLALQPILVRFSPQVFITDSV 141
           WC  +S ES+ L   +V+ SP++  + +V
Sbjct: 153 WCGSISLESIVLVEGIVKKSPEIIKSATV 181


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 358 RLNKMIDLFGGKSGANPGYVLKKEVCLEHL 269
           ++ K+I    GKSG N  Y+ +   CL HL
Sbjct: 150 QMAKIISTRRGKSGDNFVYLFELAKCLRHL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,693
Number of Sequences: 5004
Number of extensions: 52181
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)