Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1496
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified vi...    31   0.73 
U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified vi...    31   0.73 
U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical pr...    31   0.97 
AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical ...    29   2.2  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z83230-10|CAL22704.2|  714|Caenorhabditis elegans Hypothetical p...    28   6.8  
AL021481-9|CAA16332.3|  714|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform b
           protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -2

Query: 666 NYKNIGKYGIVTRSLKQLIIIPFFCYQCFMLCNLYFLLYSIKL 538
           N ++   Y  VTRS++++++    C+  F L NL+  ++ +++
Sbjct: 223 NKRSRSSYQRVTRSVQRVVLFHLLCWSPFWLFNLFSAIFRVRI 265


>U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform a
           protein.
          Length = 426

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -2

Query: 666 NYKNIGKYGIVTRSLKQLIIIPFFCYQCFMLCNLYFLLYSIKL 538
           N ++   Y  VTRS++++++    C+  F L NL+  ++ +++
Sbjct: 223 NKRSRSSYQRVTRSVQRVVLFHLLCWSPFWLFNLFSAIFRVRI 265


>U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical
           protein K06A1.2 protein.
          Length = 375

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 660 KNIGKYGIVTRSLKQLIIIPFFCYQCFM 577
           K I K+G +  ++ +LI +P F Y+CF+
Sbjct: 130 KYINKFGALFLAIFKLITVPIFVYECFL 157


>AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical
           protein Y116A8B.5 protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 133 ITSHHQKRSWTGHTTAQRVNEASIAFE*QPRDRRGPV 23
           + + H+KR   GH   QR+N+A ++ + +P D    V
Sbjct: 342 VMAMHRKRHSLGHEQQQRLNQARLSMQSRPSDASATV 378


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 281 TDFFFQNIPWIRPRF-TSE*VNHFIESLKYHHSRNK 385
           T FF  N  WIRP+  T   ++H +E L  +H  NK
Sbjct: 406 THFFLDNFIWIRPQMSTRNWIDHCLE-LTNNHRLNK 440


>Z83230-10|CAL22704.2|  714|Caenorhabditis elegans Hypothetical
           protein Y43F4B.3 protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 655 YWKIWNSDSFFETVDNNSLFLLSVFYV 575
           +W I+   S+F T+DN  L L  VFY+
Sbjct: 399 FW-IYQDLSYFHTMDNRDLGLAPVFYI 424


>AL021481-9|CAA16332.3|  714|Caenorhabditis elegans Hypothetical
           protein Y43F4B.3 protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 655 YWKIWNSDSFFETVDNNSLFLLSVFYV 575
           +W I+   S+F T+DN  L L  VFY+
Sbjct: 399 FW-IYQDLSYFHTMDNRDLGLAPVFYI 424


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 307 GYVLKKEVCLEHLRFVLRHKKKKHNKPGVRFCQKNH*HY 191
           G+  K+  CL H +  L  ++ K N  G ++C+  + HY
Sbjct: 385 GHRTKRAGCLPHPQCTLHVRRYKRNLIGSQYCEPCNGHY 423


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,607
Number of Sequences: 27780
Number of extensions: 285813
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)