Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1495
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 33 0.031
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 1.2
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.5
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 26 4.7
SPBC216.06c |swi1||replication fork protection complex subunit S... 26 4.7
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 26 4.7
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 25 8.2
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 8.2
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 8.2
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 25 8.2
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 33.5 bits (73), Expect = 0.031
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +3
Query: 402 YSLNSTSSTEYKISDVVMTMIFLLRSEKYHSLFKM--LETTFDDYTCRPQMTQVQTDTLL 575
YSL + ++ + + L E Y L + LE D C P + Q DT+L
Sbjct: 1089 YSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVD---CSPSIIDEQVDTIL 1145
Query: 576 DAVRSLLEMPSTTVDLTT-----VDIMRSSFARCF 665
+A+R ++E+ T L T +D++RS+ F
Sbjct: 1146 EALRKIIELRKTEKTLKTDSDNILDLVRSALRVLF 1180
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 540 PQMTQVQTDTLLDAVRSLLEMPSTTVDLTTVDIMRSSFARCFNSPIMKYAKIV 698
PQ+T++ + D VR T+D ++++I +S+F +K A ++
Sbjct: 182 PQVTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLI 234
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 469 CCDRKSIIRCSKCSKPRL--TTTRADRK*RRFKRTRCWTPCDLC 594
C D K ++C KC KP L + +D + ++CWT C C
Sbjct: 369 CYDNKYAVKCKKCRKPILGISVKGSDGE----YHSQCWT-CGAC 407
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/63 (19%), Positives = 26/63 (41%)
Frame = +3
Query: 435 KISDVVMTMIFLLRSEKYHSLFKMLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMPSTT 614
K D+ + K+ + +++ DY Q+ ++ D LLD R+ +
Sbjct: 438 KDQDITYICLSTAHPAKFDKAVNLALSSYSDYNFNTQVLPIEFDGLLDEERTCIFSGKPN 497
Query: 615 VDL 623
+D+
Sbjct: 498 IDI 500
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 545 NDAGSNGHVVGRRAISVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEI 685
N+ G++G +G+ D+F+ + L D ++ ++ F++SD I
Sbjct: 749 NEGGNDGERMGKNLKGDTDSFNTALLKDGKFRLLLELCGFEESDNNI 795
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 372 RNAARKLIHHYSLNSTS 422
R RKL+HH SLN+ S
Sbjct: 65 RKPTRKLVHHISLNNVS 81
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 75 LAIWPQIFPLLCDEHQNVQLNT-DVLINFIMHVARKSQNTILNNNAAIASQYAAGNADVV 251
+ ++P + PLL DE++ ++ DV F+ + K+ N N + +++
Sbjct: 496 IKLFPSVVPLLIDENEGIRRTAEDVTDQFLSRI--KNFNLGEKENVSAPAKFNGSFWSKF 553
Query: 252 VAAPSSAQPTP 284
+ + SSA P+P
Sbjct: 554 IHS-SSASPSP 563
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 426 TEYKISDVVMTMIFLLRSEKYHSLFKMLETTFDDYTCRPQMTQVQTD 566
T+Y ++ V T+ LLR YH++ + + T ++ + Q++ D
Sbjct: 322 TDYNVNFSVSTLNQLLRLNLYHAMDEKISTFSSEHITKLIEQQIKPD 368
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 105 LCDEHQNVQLNTDVLINFI 161
+CD H+N N D+L F+
Sbjct: 387 ICDLHENTSFNIDILPGFL 405
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 60 DEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINF 158
D +Q AI+ +PL CD+ + L+T + I F
Sbjct: 140 DASLQKAIYIYTYPLACDKGKKT-LSTSIAIEF 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,251
Number of Sequences: 5004
Number of extensions: 48900
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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