Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1495
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0433 - 28939817-28940146                                         29   2.8  
07_03_1289 + 25531531-25531995                                         28   6.4  
04_01_0206 + 2507827-2508705,2508844-2509902                           28   6.4  
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    28   8.5  
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694...    28   8.5  

>02_05_0433 - 28939817-28940146
          Length = 109

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = -2

Query: 641 HNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGF-EHFEQRMI 486
           H +D R+ +   RH Q+R+  ++Q+ R +++ L   R+++++ + E  EQR +
Sbjct: 32  HRLDVRRQEALERHAQERA-AIEQQWRQSMQALERERLMLEQAWMEREEQRRV 83


>07_03_1289 + 25531531-25531995
          Length = 154

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 609 SKASPTEIARRPTTCPFEPASFAVCTCSRQT 517
           SK  PT  A RPT     PA   V  C  QT
Sbjct: 99  SKLQPTPAAARPTATGAPPAMVVVSACQFQT 129


>04_01_0206 + 2507827-2508705,2508844-2509902
          Length = 645

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 602 HLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEHF 501
           +LQ R H +++   L+L++  S   + KRG  +F
Sbjct: 190 YLQDRDHRIREEEELSLQYAHSLHHICKRGIVNF 223


>05_01_0384 +
           2997465-2999777,2999960-3000035,3003027-3003102,
           3003571-3004442,3004592-3004773,3005206-3005295,
           3005388-3005675,3005776-3005997,3006053-3006133,
           3006634-3006861
          Length = 1475

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 198 NNNAAIASQYAAGNADVVVAAPSSAQPTPRPVI 296
           NNN  +A+  AAGN     A P++A P P P +
Sbjct: 594 NNNNNVANAGAAGN----TAGPAAAAPAPSPTL 622


>01_06_1604 +
           38567374-38567391,38567505-38567636,38569377-38569445,
           38569545-38569775,38570883-38571013,38571471-38571629,
           38573078-38573366
          Length = 342

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 42  KLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNT 191
           K RLK++ P    I      ++ D   +  +N + L++ + HV    +NT
Sbjct: 145 KTRLKLESPRSWRISIDEVAVVADSDGDADVNAEQLLHLLEHVGAIGENT 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,160,263
Number of Sequences: 37544
Number of extensions: 319470
Number of successful extensions: 962
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)