Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1494
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 2.8
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 2.8
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.7
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 27 3.7
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 26 4.9
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 6.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.5
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 8.6
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 25 8.6
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 196 TINIKFLLRNRNNSSCKQTMVRIKLRDKSTNNEPLMHDVQPVS 324
T+N K + N N S +T + I+ K++NN+ + +D Q VS
Sbjct: 728 TLNAKGQIANGMNDSASETDLDIQPNHKTSNNDQMGYD-QSVS 769
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 509 DSLQKLFQLHPNV*VNSRGSNRSVPNTGPSKSSA 610
DS L L N + S+GSN S N+G S SS+
Sbjct: 287 DSKPNLSTLQDNASLTSQGSNLSSQNSGLSSSSS 320
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 491 FFFTYADSLQKLFQLHPNV*VNSRGSNRSVPNTGPSKSSASQNL 622
F++ SL + N +S +N S+P T PS S+ QN+
Sbjct: 354 FYWNSTSSLSS--SVFTNTTSSSNSTNSSIPTTYPSNSTTYQNI 395
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 460 PYERNKIV*ISAL*SRSCNLS 398
PY NK V +SA RSCN+S
Sbjct: 137 PYPNNKAVKVSAKSLRSCNIS 157
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 97 NETIK-FNCLVNRGVPYSKSSLTFENKSQLCVVTTINIKFLLRN 225
NE++K F V R YS+++ T E+ S+L + +N F LRN
Sbjct: 468 NESVKAFTNWVGR---YSEATKTQEDSSRLASMKKVNPHFTLRN 508
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 584 NTGPSKSSASQNLPSDRKRDP---LRKSGEKLSGLWGYY 691
N+ PSK + S+N+ + D + + +S LWG Y
Sbjct: 35 NSSPSKENGSENVDNGEMEDETMLVYTEEDNISQLWGLY 73
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -1
Query: 296 GSLFVLLSLNFIRTIVCLQELLFLLRNKNLMFIVVTTHNWLLFSKVRLLFEYGTPRL 126
G + +++L + + Q+++ + K L+ V + NW F VRL E P L
Sbjct: 1237 GKVMNMVTLVLVPMMSLRQDMMLRVNEKGLL---VCSGNWTAFKDVRLTLETQLPDL 1290
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -1
Query: 296 GSLFVLLSLNFIRTIVCLQELLFLLRNKNLMFIVVTTHNWLLFSKVRLLFEYGTPRL 126
G + +++L + + Q+++ + K L+ V + NW F VRL E P L
Sbjct: 1237 GKVMNMVTLVLVPMMSLRQDMMLRVNEKGLL---VCSGNWTAFKDVRLTLETQLPDL 1290
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 518 QKLFQLHPNV*VNSRGSNRSVPN 586
+++F +HPN +++ SN VPN
Sbjct: 870 ERVFSIHPNCDIDALLSNGDVPN 892
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 68 GGRAHSPPGVKWLLEPMTYA 9
GG H P V WLL P Y+
Sbjct: 235 GGPLHDPNTVMWLLRPDIYS 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,933
Number of Sequences: 5004
Number of extensions: 63728
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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