Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1494
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634...    29   2.9  
09_02_0211 - 5817564-5817578,5817711-5818040,5818095-5818196,581...    28   6.8  
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322...    28   6.8  

>08_02_0824 +
           21561699-21562415,21563294-21563362,21563424-21563459,
           21564533-21564600,21565259-21565277,21565662-21565763,
           21566173-21566288,21566501-21566595,21568093-21568264,
           21568413-21568493,21569732-21569801,21570106-21570132
          Length = 523

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 581 PNTGPSKSSASQNLPSDRKRDPLRKSGEKLSG 676
           P   P  SS+S +LPS R+R P  + G +  G
Sbjct: 5   PGPAPGTSSSSSSLPSRRRRRPPPRLGRRRGG 36


>09_02_0211 -
           5817564-5817578,5817711-5818040,5818095-5818196,
           5818616-5818915
          Length = 248

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 396 LDKLQERDYKAEIQTILFRSYGSRSMKINLNAFFLP 503
           ++ L E D + ++  +L++  G R +K+N+   FLP
Sbjct: 128 IESLNETDMRTDL-FLLYQEVGGRKIKVNVTESFLP 162


>05_06_0156 -
           26031463-26031572,26031961-26032039,26032133-26032261,
           26032362-26032559,26032741-26032900,26032980-26033147,
           26033290-26033405,26033491-26033586,26033675-26034058,
           26035150-26035572,26037202-26037315,26037969-26038017,
           26038103-26038262,26038345-26039014
          Length = 951

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 596 SKSSASQNLPSDRKRDPLRKSGEKLSGLWGYYL 694
           +  + SQNL   RKR P+RK   KLS    YYL
Sbjct: 355 TSQALSQNLAGLRKRSPIRKISTKLS----YYL 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,897,034
Number of Sequences: 37544
Number of extensions: 359834
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)