Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1493
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.1  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.1  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   2.8  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    26   4.9  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 595 SCQVMFKISSHLLDITTCNISEYRLSNLSQALHNFKLRFF*INYHMNRKLSRKMIK 428
           S   +F   +H+L +TT     +   N    LH F + FF +   M+  + ++++K
Sbjct: 447 SLMQLFTTMAHILVVTTRERINFPELNEWITLHRFVISFFTVFIQMSGNIGKEILK 502


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 523 LSNLSQALHNFKLRFF*INYHMNRKLSRKMIKGSRKFL--FLCKKYLGNMIRKHY 365
           LSNL++  H+F +  F    + N K  R+ +    KF+   L + Y  N  RKHY
Sbjct: 276 LSNLNEKTHHFFISCFKKQPYNNPKFFRRKVDLINKFIGQRLMETYSRNK-RKHY 329


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 565 HLLDITTCNISEYRLSNLSQALHNF 491
           HL  +TT N+SE  L  L  +L+N+
Sbjct: 180 HLASLTTKNVSEPELDKLRHSLYNW 204


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 541 NISEYRLSNLSQALHNFKLRF-F*INYHMNRKLSRK 437
           ++S+ R +NLS  +H +KL F F  N +   K+  K
Sbjct: 194 SLSDIRFTNLSGDVHGYKLEFEFDSNDYFTNKILTK 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,886
Number of Sequences: 5004
Number of extensions: 35374
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)