Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1492
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.1  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   5.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.5  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 534 CLFSYNYVPKILVTYCLKGMLYLT 605
           CL S NY   IL   CL   LYL+
Sbjct: 52  CLSSCNYALSILHNICLASFLYLS 75


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 471 CMPVATNISAFIIWIKKYR*YCLFSYNYVPKILVTYCL 584
           C+    +IS FI++ +KYR  C  ++  +   L+ Y +
Sbjct: 9   CLTSTVSISNFILYNRKYRKSCALAFLTLRYTLLCYSI 46


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +3

Query: 549 NYVPKILVTYCLKGMLYL---TVSNESICLKETNV 644
           N+VP I++  C  G +YL   ++S+E +  K T++
Sbjct: 479 NHVPMIVIDQCDGGSIYLSKSSLSSEVVTSKSTSL 513


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +1

Query: 313 YFFVSSLISYFVYLRIMEST 372
           +FF++S ++YF Y R++ S+
Sbjct: 66  FFFITSGLAYFSYFRVLFSS 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,949
Number of Sequences: 5004
Number of extensions: 44114
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)