Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1492
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical p...    31   0.94 
Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    30   1.6  
AF039039-4|AAB94177.2|  591|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical
           protein F11A5.15 protein.
          Length = 191

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 306 SLVFFCIFTYIIFRIFAYNGKYLYCFMYIIFLNIEE 413
           S++FFC F  +IF +F   G  +Y FM  +F NIE+
Sbjct: 143 SVLFFCAFFILIF-LFCILGS-IYVFMAKLFRNIEQ 176


>Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical
           protein F56F3.2b protein.
          Length = 685

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 303 NSLVFFCIFTYIIFRIFAYNGKYLYC--FMYIIF 398
           N L     F YI+ R+F +   Y+ C  FMY+IF
Sbjct: 339 NILTLRSAFDYILMRLFRFWPAYIVCVLFMYVIF 372


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 303 NSLVFFCIFTYIIFRIFAYNGKYLYC--FMYIIF 398
           N L     F YI+ R+F +   Y+ C  FMY+IF
Sbjct: 339 NILTLRSAFDYILMRLFRFWPAYIVCVLFMYVIF 372


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 303 NSLVFFCIFTYIIFRIFAYNGKYLYC--FMYIIF 398
           N L     F YI+ R+F +   Y+ C  FMY+IF
Sbjct: 339 NILTLRSAFDYILMRLFRFWPAYIVCVLFMYVIF 372


>AF039039-4|AAB94177.2|  591|Caenorhabditis elegans Hypothetical
           protein T08B1.1 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 300 QNSLVFFCIFTYIIFRIFAYNGKYLYCFMYIIFLNIE 410
           +  +VF+  F  ++ +I A+    ++CF+ I++ +IE
Sbjct: 23  KKDVVFYTNFEEVLQKIGAFGPYQIFCFIVILYASIE 59


>Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical
           protein F13A7.13 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 211 ISYFLYVIVKQKI--YISKYLTIYSWS*LNVHKTA*YFFVSSLISYF 345
           I YFL++        ++S Y+TI  W     H  A Y      IS+F
Sbjct: 29  IPYFLFIFFSMVTCSWLSFYMTIVMWKVKKFHGNATYILSCMYISWF 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,405,021
Number of Sequences: 27780
Number of extensions: 232082
Number of successful extensions: 417
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)