Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1490
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   3.6  
SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   3.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   4.7  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    24   6.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   8.3  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    23   8.3  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    23   8.3  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    23   8.3  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    23   8.3  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +1

Query: 10  IVMSDLRPFSITYLSLVSVTKD 75
           ++++D R FS+T+L+ + + +D
Sbjct: 215 LILNDAREFSLTFLNTLKLARD 236


>SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 37  SITYLSLVSVTKDRQIYSFFLTYPLSTNGSITIRNTIKELQTKSS 171
           SI   ++ S+  D + +S  LTY    N SIT+   ++ +Q  S+
Sbjct: 13  SIVSTAVESLLPDEKRHSQTLTYADPRNISITVDRVLQRIQCTST 57


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 80   KSILFSLLTLYRQMDL*QFVTLLKSYKRNHP 172
            + IL SL  + R+ D    VTLL+  K+ HP
Sbjct: 915  EKILLSLREIIREEDQLSRVTLLEYLKQLHP 945


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 255 TRKHSALLNSYQSKXKTIITIPIVFELHG*FRL*LFNSVTNCYRSICR 112
           T+K S LL+    K KT+   PI     G F+L   +  ++C+R+I R
Sbjct: 57  TKKRSRLLSGKALKDKTVNRCPIC----GSFKL-AHHLCSHCFRNIRR 99


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 59   FRLLKIDKSILFSLLTLYRQMDL*QFVTLLKSY 157
            F+LL   +++L SLL  ++Q+DL   +   + Y
Sbjct: 2007 FQLLLEIRNVLLSLLQSHKQLDLSDDLASFRKY 2039


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 194 YLLYLNYMDDFVCNSLIVLRIVIDPFVD 111
           YLL L+ M+      L+ LR + D F+D
Sbjct: 66  YLLALSKMNSDAMEMLVFLRKMADVFID 93


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 99  YLPSIDKWIYNNS 137
           YLP I KWI  NS
Sbjct: 245 YLPKIKKWIDENS 257


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 254 PASIRHY*IVISLNXKQLLPYLLYLNYMDDFVCNS 150
           P S+  Y  V+++  K+++P+L   N + DF+ ++
Sbjct: 241 PLSVNLYKQVLNVIHKRVIPFLQKPNLLMDFLTDA 275


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 185 YLNYMDDFVCNSLIVLRIVIDPFVDR 108
           Y NY  DF  N+L   ++  DP +D+
Sbjct: 53  YGNYRSDFNVNNLGFYKVSKDPTLDK 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,986
Number of Sequences: 5004
Number of extensions: 21306
Number of successful extensions: 48
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)