Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1490
(316 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec... 29 2.9
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein... 29 2.9
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re... 29 2.9
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein... 29 2.9
X86018-1|CAA60013.1| 617|Homo sapiens muf1 protein. 27 8.8
BX537366-1|CAD97609.1| 617|Homo sapiens hypothetical protein pr... 27 8.8
BC101524-1|AAI01525.1| 812|Homo sapiens leucine rich repeat con... 27 8.8
BC101522-1|AAI01523.1| 812|Homo sapiens leucine rich repeat con... 27 8.8
BC092479-1|AAH92479.1| 668|Homo sapiens LRRC41 protein protein. 27 8.8
BC004953-1|AAH04953.2| 572|Homo sapiens LRRC41 protein protein. 27 8.8
AL122001-5|CAI21964.1| 812|Homo sapiens leucine rich repeat con... 27 8.8
AL121602-2|CAI22118.1| 812|Homo sapiens leucine rich repeat con... 27 8.8
AK223420-1|BAD97140.1| 614|Homo sapiens MUF1 protein variant pr... 27 8.8
AK125827-1|BAC86308.1| 620|Homo sapiens protein ( Homo sapiens ... 27 8.8
>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
(AA -19 to 4525) protein.
Length = 4544
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 77 DKSILFSLLTLYRQMDL*QFVTLLKSYKRNHPCNSNTIG 193
+K++L S TL+R MDL F L + NHPC N G
Sbjct: 3264 NKTLLIS--TLHRPMDLHVFHALRQPDVPNHPCKVNNGG 3300
>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
lipoprotein-related protein 1 (alpha-2-macroglobulin
receptor) protein.
Length = 4544
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 77 DKSILFSLLTLYRQMDL*QFVTLLKSYKRNHPCNSNTIG 193
+K++L S TL+R MDL F L + NHPC N G
Sbjct: 3264 NKTLLIS--TLHRPMDLHVFHALRQPDVPNHPCKVNNGG 3300
>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
protein protein.
Length = 4544
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 77 DKSILFSLLTLYRQMDL*QFVTLLKSYKRNHPCNSNTIG 193
+K++L S TL+R MDL F L + NHPC N G
Sbjct: 3264 NKTLLIS--TLHRPMDLHVFHALRQPDVPNHPCKVNNGG 3300
>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
lipoprotein-related protein 1 variant protein.
Length = 2359
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 77 DKSILFSLLTLYRQMDL*QFVTLLKSYKRNHPCNSNTIG 193
+K++L S TL+R MDL F L + NHPC N G
Sbjct: 1080 NKTLLIS--TLHRPMDLHVFHALRQPDVPNHPCKVNNGG 1116
>X86018-1|CAA60013.1| 617|Homo sapiens muf1 protein.
Length = 617
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 221 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 257
>BX537366-1|CAD97609.1| 617|Homo sapiens hypothetical protein
protein.
Length = 617
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 221 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 257
>BC101524-1|AAI01525.1| 812|Homo sapiens leucine rich repeat
containing 41 protein.
Length = 812
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 469 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 505
>BC101522-1|AAI01523.1| 812|Homo sapiens leucine rich repeat
containing 41 protein.
Length = 812
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 469 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 505
>BC092479-1|AAH92479.1| 668|Homo sapiens LRRC41 protein protein.
Length = 668
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 420 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 456
>BC004953-1|AAH04953.2| 572|Homo sapiens LRRC41 protein protein.
Length = 572
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 229 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 265
>AL122001-5|CAI21964.1| 812|Homo sapiens leucine rich repeat
containing 41 protein.
Length = 812
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 469 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 505
>AL121602-2|CAI22118.1| 812|Homo sapiens leucine rich repeat
containing 41 protein.
Length = 812
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 469 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 505
>AK223420-1|BAD97140.1| 614|Homo sapiens MUF1 protein variant
protein.
Length = 614
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 271 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 307
>AK125827-1|BAC86308.1| 620|Homo sapiens protein ( Homo sapiens
cDNA FLJ43839 fis, clone TESTI4006079, highly similar
to Homo sapiens MUF1 protein (MUF1). ).
Length = 620
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 100 TYPLSTNGSITIRNTIKELQTKSSM*FKYNRYGNNCF 210
T PLST ++T+ + + + S+ YN G+N F
Sbjct: 359 TVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIF 395
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,944,817
Number of Sequences: 237096
Number of extensions: 677758
Number of successful extensions: 799
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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