Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1490
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   0.66 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   0.66 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   0.66 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   0.66 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   4.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   6.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   8.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 296 DKLIRY*NRSNHETPASIRHY 234
           D  +RY NRS +E   +I HY
Sbjct: 119 DPRLRYSNRSQYEFLNAIHHY 139


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 296 DKLIRY*NRSNHETPASIRHY 234
           D  +RY NRS +E   +I HY
Sbjct: 119 DPRLRYSNRSQYEFLNAIHHY 139


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 296 DKLIRY*NRSNHETPASIRHY 234
           D  +RY NRS +E   +I HY
Sbjct: 170 DPRLRYSNRSQYEFLNAIHHY 190


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 296 DKLIRY*NRSNHETPASIRHY 234
           D  +RY NRS +E   +I HY
Sbjct: 119 DPRLRYSNRSQYEFLNAIHHY 139


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 10  IVMSDLRPFSITYLSLVSVTKDRQIYSFFLTYPLS 114
           I+  D  P   T LS+     +RQ+Y+  +++PL+
Sbjct: 73  IIEMDSNPIK-TALSVCKSLIERQVYAVVVSHPLT 106


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 136 RNTIKELQTKSSM*FKYNRYGNN 204
           +NTI++  TKSS+   + R   N
Sbjct: 539 KNTIEQKSTKSSVTIPFERTFRN 561


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 233 NNAECLRVFHGWTYFN 280
           N  + L V H W YF+
Sbjct: 27  NLEKSLNVIHEWKYFD 42


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 230 FNNAECLRVFHGWTY 274
           F+  EC  +F  WT+
Sbjct: 151 FDVQECPLIFESWTH 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,587
Number of Sequences: 438
Number of extensions: 1632
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)