Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1489
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    26   1.5  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   2.6  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    23   8.1  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    23   8.1  

>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 163 SCFGIAAHLWRTHPRAKIDGRAHSPPGVKWLPEPIDIYDXF 285
           S F +   LW      KI G      GVK LP  I I D +
Sbjct: 262 STFNVDTLLWAIGRAPKIQGLRLEKAGVKTLPNGIIIADTY 302


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 193 AKDALQYQNNFFFSFCQMFKCNYATAAMHLI 101
           AK  +QY NN FF    +   N + A + ++
Sbjct: 369 AKQQMQYTNNLFFDDMMLLLSNLSNARVAIL 399


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 208 LLDEYAKDALQYQNNFFFSFCQMFK 134
           +LD + K   Q + N FF FC   K
Sbjct: 363 VLDLHGKQKQQRRTNTFFEFCNAEK 387


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
 Frame = -3

Query: 167 QLFFFFL---SNV*--MQLCNCCDAFNNVNS 90
           Q FFF +   SNV    QLC C   FNN+ S
Sbjct: 121 QKFFFIIVAASNVYSIFQLCGCLLMFNNIIS 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 964,098
Number of Sequences: 5004
Number of extensions: 16424
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)