Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1489
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0634 - 26777889-26778452,26778526-26778797,26778905-267791...    28   1.8  
02_05_1351 - 35855543-35856751                                         26   5.4  
01_06_1522 - 37962431-37963060,37963216-37963542                       26   7.2  
06_03_0525 - 21742288-21742605,21743348-21743542,21743553-217437...    25   9.5  

>04_04_0634 -
           26777889-26778452,26778526-26778797,26778905-26779117,
           26779497-26779578
          Length = 376

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 202 PRAKIDGRAHSPPGVKWLPEPIDIYDXF 285
           PR K+D  +H PPG ++ P   ++ D +
Sbjct: 42  PRKKMDAFSHVPPGFRFHPTDEELVDYY 69


>02_05_1351 - 35855543-35856751
          Length = 402

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 172 GIAAHLWRTHPRAKID--GRAHSPPGVKWLPEP 264
           G AAHL +      I   G +++ P V WLPEP
Sbjct: 71  GRAAHLLQADGTIPIHHAGASYNLPAVLWLPEP 103


>01_06_1522 - 37962431-37963060,37963216-37963542
          Length = 318

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 220 GRAHSPPGVKWLPEPID 270
           G+ H PPG +WL E +D
Sbjct: 46  GQLHLPPGGRWLDEYMD 62


>06_03_0525 -
           21742288-21742605,21743348-21743542,21743553-21743789,
           21745178-21745432,21745516-21745656,21745811-21745972,
           21746084-21746244,21747921-21748080
          Length = 542

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 145 DKKKKKSCFGIAAHLWRTHPR 207
           DK+ +  C+ + AH W   P+
Sbjct: 344 DKQARNICYSVPAHSWHYQPK 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,184,060
Number of Sequences: 37544
Number of extensions: 107910
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)