Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1489
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   6.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   8.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 252 PLNTWWAVSSS 220
           PLN W++++SS
Sbjct: 429 PLNDWYSLASS 439


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 193 AKDALQYQNNFFFSFCQ 143
           A + L+     FF FCQ
Sbjct: 63  ANEILELFGRMFFEFCQ 79


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 193 AKDALQYQNNFFFSFCQ 143
           A + L+     FF FCQ
Sbjct: 63  ANEILELFGRMFFEFCQ 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,618
Number of Sequences: 438
Number of extensions: 1008
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)