Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1488
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF068720-3|AAC17786.1|  332|Caenorhabditis elegans Seven tm rece...    27   9.2  

>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
           protein C38D9.3 protein.
          Length = 1496

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 324 DDIHKNIEPFIF-LPNSVKSETYKSSRR 404
           DDI + I PFI  LP S+K+E  KS+R+
Sbjct: 554 DDI-RTISPFIAKLPTSIKNELAKSTRK 580


>AF068720-3|AAC17786.1|  332|Caenorhabditis elegans Seven tm
           receptor protein 243 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 259 HIYNISMVWTFIASLIS*YRHSMIYIKTLNLLFSYL 366
           +I  I ++W      I  Y++ MIYI    +L+S L
Sbjct: 22  NIILIQLIWHRSPKAIGFYKYLMIYISVFEILYSLL 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,955,618
Number of Sequences: 27780
Number of extensions: 265380
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)