Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1487
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    32   0.084
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   7.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   7.3  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   9.6  

>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 32.3 bits (70), Expect = 0.084
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -3

Query: 663 NADSLRTSHTTTKSASLLPARNLARIAATTSIAEHPRGT*QFSISQNIPIGTLADLCL*T 484
           N  S   ++TTT ++S   A + A  +++TS      G   FS+S+N+ +   A LCL T
Sbjct: 507 NTTSTNATNTTTTTSSSSTASSSASASSSTSATSGAAGD-LFSVSKNLMMTLTAGLCLIT 565


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = -1

Query: 239 SIYSFFKNTKVVQHMLENTKKKN*LQVYDHNC------NHMPYI*LSIKLNRLNYFNLIR 78
           S+  +F N  +  ++ EN+  K+ L +Y ++       N  P++  ++KL R N+ N+IR
Sbjct: 32  SVNPYF-NLALENYLYENSTAKHCLLLYTNSPSVIIGRNQNPWVEANVKLCRDNFVNIIR 90


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 236 SMLYRMSLSRKFESLGSGSTKGARSHSAHGISRGISSPSMKIPLPPR 376
           S+  + +LS     +   ST+G    S HG S  +S+ S   P+P R
Sbjct: 180 SLTTKSNLSGNLNMVTPASTQGPAFSSKHGFSNALSTAS---PIPVR 223


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = -3

Query: 789 LQHYHEHSVKSDTIEKRTLID*TQSND*NT-LLTCASFNSCNLNADSLRTSHTTTKSASL 613
           L  +H H  K+D IE  + I+ ++SN   + + + +  NS +++  S  +SH+T   A+ 
Sbjct: 478 LHRHHHHHHKTDLIESDSGIEASESNRRKSDIFSFSGRNSFSVSRPS--SSHSTLSYAN- 534

Query: 612 LPARNLARIAATTSIAEHPRGT*QFSISQNIP 517
             A +   +A  T      R   Q SI+  +P
Sbjct: 535 DSASSAVNVAGETGSLPPLRE--QTSITSGVP 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,831
Number of Sequences: 5004
Number of extensions: 57975
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)