Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1487
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729           37   0.017
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524     36   0.050
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768           35   0.088
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           32   0.62 
04_03_0529 + 16812281-16812372,16812572-16812719                       29   5.8  
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    28   7.6  

>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
          Length = 559

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 479 HRVHKQRSASV--PIGIFWDIENCQVPRGCSAIDVVAAIR 592
           H     +S SV  P+ IFWDIENC VP      DV   +R
Sbjct: 31  HSQANNQSVSVLGPVAIFWDIENCPVPSDVRPEDVAGNVR 70


>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
          Length = 652

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 503 ASVPIGIFWDIENCQVPRGC 562
           A+    ++WDIENCQVPR C
Sbjct: 5   ATAKTSVWWDIENCQVPRAC 24


>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
          Length = 1004

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 491 KQRSASVPIGIFWDIENCQVPRGCS----AIDVVAAIRAKFLAG 610
           ++ S +V + ++WD ENC +P G +    A  V AA+RA  + G
Sbjct: 47  EEESKAVKVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRG 90


>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 497 RSASVPIGIFWDIENCQVPRGCSAIDVVAAIRA 595
           RS +V + ++WD ++C +P+G +   V   + A
Sbjct: 53  RSRAVKVSVWWDFQSCHLPQGANPCRVATRVTA 85


>04_03_0529 + 16812281-16812372,16812572-16812719
          Length = 79

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 122 VKCKAYDCSCGRKLEVNFFSLCFPTYVGLLLYS*KNCKSMLY 247
           +K + Y     ++ E NF SLCF  Y+ +L +     KS +Y
Sbjct: 27  MKGEGYRVGKMQRFEANFSSLCFDFYLYILFFDILRRKSKVY 68


>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -1

Query: 713 MTRIHYLLAHHLTPAI*MQTPYVHHILPQNQPLSSLL 603
           M R+H+LL   L+ A+    P  HH+LP   P SSLL
Sbjct: 1   MARLHHLL---LSRAL-ASHPLHHHLLPSPPPSSSLL 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,235,547
Number of Sequences: 37544
Number of extensions: 343853
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)