Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1487
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   4.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 285 LVALKEREVIQLMAFPEVYLVLP*KYHYHLD 377
           + A+  R+  Q + FP VY +LP    +HLD
Sbjct: 141 VAAVLTRQDTQSVIFPPVYEILP---QHHLD 168


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 629 QNQPLSSLLEIWHGLLLQHLLQSTHGVLDNSQYPKI 522
           Q +PL  L+E W  LL   +L++   +LD    PK+
Sbjct: 491 QPEPLIELIEHWMPLLPNWILEN---ILDMLVLPKL 523


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 431 SNNYQNHLMSRLLYLLSIIEVVMV 360
           +NNY N+   +L Y ++ IE + V
Sbjct: 315 NNNYNNYNNKKLYYNINYIEQIPV 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,912
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)