Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1485
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   3.1  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    26   5.4  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    25   9.5  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 407 HTTHSIVSDYLPSLMDVSKASGRAKSLP 490
           HTTH +VSD  P L  VS    RA S P
Sbjct: 443 HTTHGLVSDIRP-LPSVSSPIMRADSTP 469


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 173 YDKKCARQYQLATRLYSLSAILI 105
           YD+K  +QY LA+  YSL  ILI
Sbjct: 248 YDEK-TKQYSLASTTYSLDEILI 269


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -2

Query: 144 TCDSTLLFKRHSY*VCSRQRE*INASLIILKACMYTLLFILNQQN 10
           +C++T   ++  Y V ++  + +N   ++LK  M+   F+L Q+N
Sbjct: 122 SCENTEFLEKF-YDVTTKALQNLNNERLMLKVLMHVARFLLTQKN 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,186
Number of Sequences: 5004
Number of extensions: 48246
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)