Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1485
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 555 STDLTFYNKQFWKPFELKRFAFGSDLALPL 466
           S++   YN + W  ++  + +FG  L  PL
Sbjct: 626 SSEYNQYNSRIWGGYKFDKRSFGFPLDKPL 655


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 555 STDLTFYNKQFWKPFELKRFAFGSDLALPL 466
           S++   YN + W  ++  + +FG  L  PL
Sbjct: 626 SSEYNQYNSRIWGGYKFDKRSFGFPLDKPL 655


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 585 LNIYLQNFHCSTDLTFY 535
           LN Y  +F   TD+TFY
Sbjct: 210 LNTYKGDFPTETDITFY 226


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -3

Query: 713 LLEHMHRYYEALK*ILCISFWRASSLPQTIVNIVMQRALHSNALIFTYKIFTVL 552
           L E+M   Y  L+     + WR  S  +   ++  Q     N  ++ YK  T+L
Sbjct: 99  LPENMTSEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTIL 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,428
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)