Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1484
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0527 - 15025031-15025993                                         29   1.9  
05_03_0524 + 14994170-14995132                                         29   1.9  
01_06_1749 - 39636951-39638102                                         29   2.5  
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716...    28   4.3  
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101...    27   5.7  
05_03_0625 - 16325827-16326495                                         27   5.7  
01_05_0057 + 17705023-17705143,17706186-17706538,17708002-177080...    27   5.7  
12_02_0091 - 13498143-13498499,13499005-13499301                       27   7.5  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    27   7.5  
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210...    27   10.0 

>05_03_0527 - 15025031-15025993
          Length = 320

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 350 KVSSIVTTAAPPFKPKRITASWQK*AGWW 264
           + S+ ++ ++PPFKP R+   W    G W
Sbjct: 124 RCSTPLSPSSPPFKPSRVIVRWWAPPGGW 152


>05_03_0524 + 14994170-14995132
          Length = 320

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 350 KVSSIVTTAAPPFKPKRITASWQK*AGWW 264
           + S+ ++ ++PPFKP R+   W    G W
Sbjct: 124 RCSTPLSPSSPPFKPSRVIVRWWAPPGGW 152


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 344 SSIVTTAAPPFKPKRITA 291
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>04_03_0988 -
           21469811-21469831,21470823-21471047,21471327-21471634,
           21471864-21472234,21472327-21472430,21473086-21473325
          Length = 422

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -2

Query: 426 PGVKWLLEPIDIYNVNAPPTLRYKF*GLKYSYNGCPTLQTETH 298
           P +  L EPI +  VNA    +Y+  G KY  +G PTL    H
Sbjct: 86  PVLAGLSEPIIVAKVNAD---KYRKLGSKYGVDGFPTLMLFIH 125


>07_01_0139 -
           1014952-1015165,1015271-1015350,1015420-1015629,
           1015925-1016044,1016650-1016709,1017129-1017204,
           1018189-1018352,1018428-1018490,1018815-1018902,
           1018997-1019647,1019965-1020449
          Length = 736

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 371 PPYDISSKVSSIVTTAAPPFKPKRITASWQK 279
           PP  I+S  +SIV  +AP  +   +   WQK
Sbjct: 331 PPGAINSMQTSIVNQSAPKVEMPSVAGQWQK 361


>05_03_0625 - 16325827-16326495
          Length = 222

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 371 PPYDISSKVSSIVTTAAPPFKPKRITASW-QK*AGWWYLS 255
           PP   + + S+ ++ ++PPF P R+   W     GW  L+
Sbjct: 21  PPPPAAPRCSTALSPSSPPFHPTRLRIRWAPPPVGWCKLN 60


>01_05_0057 +
           17705023-17705143,17706186-17706538,17708002-17708044,
           17708698-17709140
          Length = 319

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 70  FRNSIGGNPQIIFSSS*SEYSKNIHIIIFKMNNFILSIVVRKKK 201
           F N+  G P++ F  S  EY  N  ++ F    F L  + R  K
Sbjct: 68  FHNNQPGKPKVTFEGSQEEYKDNDGVLFFDGETFRLERLHRAVK 111


>12_02_0091 - 13498143-13498499,13499005-13499301
          Length = 217

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -3

Query: 371 PPYDISSKVS-SIVTTAAPPF 312
           PPY  S+ +S S+ TTAAPPF
Sbjct: 100 PPYSSSTLLSHSLHTTAAPPF 120


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 327 RCNYT*DLRTYIVRWVAHLRCRCL 398
           RC  T  LR    RW  HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324


>02_04_0182 +
           20719782-20720033,20720502-20720605,20720693-20721066,
           20721302-20721609,20721853-20722092
          Length = 425

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 426 PGVKWLLEPIDIYNVNAPPTLRYKF*GLKYSYNGCPTLQTETH 298
           P +  L  PI +  VNA    +YK  G KY  +G PTL    H
Sbjct: 90  PVLAGLSTPIVVAKVNAD---KYKKLGSKYGVDGFPTLMLFDH 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,608,334
Number of Sequences: 37544
Number of extensions: 232315
Number of successful extensions: 465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)