Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1480
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 31 0.94
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 29 2.9
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241... 29 2.9
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438... 28 5.0
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 28 5.0
10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448 27 8.8
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 27 8.8
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095... 27 8.8
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 48 DPTQNMCFFGKHRI-LFSNRKDVEVGDGVKETD 143
DPT C F KHRI LFS R+ E D K D
Sbjct: 437 DPTLLCCAFKKHRIYLFSRREPEEPEDATKGRD 469
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 SIILKVRYNLFPNL--FLFPISSLIAFRDYYSYVWFFRRVYGGKPE 393
S+ + +FP L + P + + RD + VW FR +Y G+P+
Sbjct: 115 SVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPK 160
>04_04_1488 -
33922253-33922361,33922459-33922649,33922752-33924130,
33924205-33924340,33924427-33924502,33924806-33924925,
33925005-33925082,33925605-33925695,33925805-33925889,
33925977-33926132,33926317-33926373,33926454-33926552,
33926702-33926814,33926924-33927014
Length = 926
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 SIILKVRYNLFPNL--FLFPISSLIAFRDYYSYVWFFRRVYGGKPE 393
S+ + LFP L + P + + RD + +W FR +Y G+P+
Sbjct: 159 SVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPK 204
>06_03_1298 +
29141578-29141623,29142129-29142250,29143818-29143874,
29143983-29144138,29144220-29144304,29144575-29144665,
29144807-29144971,29145064-29145186,29145334-29145409,
29145513-29145642,29145951-29147824,29148339-29148529,
29148697-29148860,29149164-29149275,29149276-29149294
Length = 1136
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 SIILKVRYNLFPNL--FLFPISSLIAFRDYYSYVWFFRRVYGGKPE 393
S+ + +FP L + P + + RD + VW FR +Y G+P+
Sbjct: 114 SVPRRAAEKIFPPLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPK 159
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 SIILKVRYNLFPNL--FLFPISSLIAFRDYYSYVWFFRRVYGGKPE 393
S+ + +FP L + P + + RD + VW FR +Y G+P+
Sbjct: 247 SVPRRAAEKIFPPLDFSMQPPAQELQARDIHDNVWTFRHIYRGQPK 292
>10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448
Length = 729
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 313 PISSLIAFRDYYSYVWFFRRVYGGKP 390
P+ +++A +D + VW FR +Y G P
Sbjct: 226 PVQTVLA-KDVHGVVWKFRHIYRGTP 250
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 313 PISSLIAFRDYYSYVWFFRRVYGGKP 390
P+ +++A +D + VW FR +Y G P
Sbjct: 164 PVQTVLA-KDVHGVVWKFRHIYRGTP 188
>06_03_0508 -
21607706-21608863,21608943-21609090,21609411-21609523,
21609612-21609705,21609841-21609950,21610093-21610257,
21611660-21611800
Length = 642
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 244 EMSK*VSIILKVRYNLFPNLFLFPISSLIAFRDYYSYVWFFRRVY 378
E++K VS IL Y L + F ++ I F Y+ WF R++Y
Sbjct: 595 EITKLVSGILYFGYMLIISYAFFVLTGTIGF---YACFWFVRKIY 636
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,119
Number of Sequences: 37544
Number of extensions: 248486
Number of successful extensions: 430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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