Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1480
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.4  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 164 YKGTNLSIGLFHSVPHLYVFSV*KQYSMFSKKTHIL 57
           Y  T   + L  S+P  Y+F +  Q+  FS+   IL
Sbjct: 164 YLRTWFFLDLISSIPLDYIFLIFNQFQDFSESFQIL 199


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 164 YKGTNLSIGLFHSVPHLYVFSV*KQYSMFSKKTHIL 57
           Y  T   + L  S+P  Y+F +  Q+  FS+   IL
Sbjct: 164 YLRTWFFLDLISSIPLDYIFLIFNQFQDFSESFQIL 199


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 164 YKGTNLSIGLFHSVPHLYVFSV*KQYSMFSKKTHIL 57
           Y  T   + L  S+P  Y+F +  Q+  FS+   IL
Sbjct: 164 YLRTWFFLDLISSIPLDYIFLIFNQFQDFSESFQIL 199


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 438 IYHQIGIGTH*EDPARNSVGCVYGLIRTLNSSSCSTRTVT 557
           +Y +IG+    +  A N  G V+G  + + S    TR ++
Sbjct: 224 LYIRIGLRIQSDSLAENVEGYVHGETKQVQSRKTITRMLS 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,832
Number of Sequences: 438
Number of extensions: 2830
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)