Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1479
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    28   1.2  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    27   2.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   6.2  

>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 69  DALVADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQ 248
           D  V+DE   L   +A + +   L   + E  +P   + S FK+    H ++KI +++L 
Sbjct: 801 DTFVSDELNSLCATNAYNRISTFLRMQIDEECKPCQFKKSNFKE----HFQNKIYQEQLD 856

Query: 249 KI 254
           K+
Sbjct: 857 KL 858


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 713 GGILPSGPGPKGILGSGPERCLWLRTQRKAY 621
           GGIL  G G  G+    PE   WL  Q+  +
Sbjct: 907 GGILAQGAGSDGVAKDVPENHSWLPAQKNFF 937


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 102 ANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKI 254
           + A  ++ +PP  SSV   T+ P+S   S+  D  LN  E+ + E K  +I
Sbjct: 77  SEAPRINEIPPSTSSVEKSTTIPNS---SVVLDHLLNEGENTLEEVKPSEI 124


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 561 RAINFPEPQSQVFAFPLTGPVRLPLRP 641
           + ++   P  Q  +F  +GP R P+RP
Sbjct: 496 KQLHLANPNRQAASFNFSGPKRAPIRP 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,073
Number of Sequences: 5004
Number of extensions: 56429
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)