Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1479
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0074 - 19821699-19823702 31 1.2
03_05_0373 + 23581812-23583293 30 1.6
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 30 2.1
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638 29 2.8
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.8
11_03_0099 - 9983044-9983052,9983145-9983939,9984031-9984301,998... 29 3.7
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 28 6.4
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 28 6.4
>11_06_0074 - 19821699-19823702
Length = 667
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +3
Query: 375 DLDELAGAFLANNQKGRMNCVVERRNDDPMERRFPFNILGAFAPRSAHAERVAIICHGGD 554
D D L KG +N ++ + D P+E R + A A H+ +I HG
Sbjct: 446 DADHLPILIYEYAAKGSLNDILYSKEDFPLELRLKIAVKTAEALEFLHSSAFCVIRHGNI 505
Query: 555 EPRAI 569
+P I
Sbjct: 506 KPSNI 510
>03_05_0373 + 23581812-23583293
Length = 493
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -1
Query: 695 GPGPKGILGSGPERCLWLRTQRKAYWTGQREGKYLGLWLREIDCPGLISS-VADDGYAFG 519
G G G S P RC T K+ W G G GL++S V +DG+ +
Sbjct: 54 GAGGYGSAASSPSRCS-ASTPPKSPWAAHLPGLGGGGVGTGAGATGLVASLVKEDGHVYS 112
Query: 518 MSAAG 504
++AAG
Sbjct: 113 LAAAG 117
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 232 TKTNCRKLTTIRMTHQTRV--MRVLSPTVLLKRTTNLKRLDRCSNCLFSLTLMSWRALS 402
+ T C+ L + H+ + +++ ++ TT+ K +D CSNC S +L A+S
Sbjct: 297 SSTGCKDLEAMIKEHEKFIGDQKIIMQSLSKDVTTSKKLVDDCSNCQLSASLRPHDAVS 355
>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
Length = 504
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 232 TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSNCLFSLTL 381
T T + ++ +R+T R MR+L+ + + + L RC CL L L
Sbjct: 330 TTTVVKGVSVVRLTEAVRTMRILAINMFVLNLAKVIDLMRCFPCLEKLYL 379
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 90 PLPLANAHA-LHGVPPMLSSVLPETSQPSSSRPSLFKDDALN 212
P P A +H H P +L+S+LP PSSS PSL +LN
Sbjct: 2522 PSPYATSHGNQHQRPSILASLLPFVL-PSSSNPSLTAPLSLN 2562
>11_03_0099 -
9983044-9983052,9983145-9983939,9984031-9984301,
9984857-9985056
Length = 424
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 707 ILPSGPGPKGILG--SGPERCLWLRTQRKAYWTGQREGKYLGLWLREID 567
+ SGPG + + SG E +RT+++ WT + + + + WL ++
Sbjct: 118 VTKSGPGEQHPINIDSGGEETPTVRTEKRLTWTHEEDIRLVSAWLNNLN 166
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 84 DEPLPLANAHALHGVPPMLSSVLPE---TSQPSSSRPSLFKDDALNHAESKINED 239
+E P +N ++ +PP +PE T +P SS ++KD+ +S N+D
Sbjct: 265 NEVSPASNDSSIDVLPPREGLEVPESVATVKPGSSTADVYKDEVEEDMDSDKNKD 319
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 555 EPRAINFPEPQSQVFAFPLTGPVRLPLRPQPET 653
EP + P+P + P PV P P P T
Sbjct: 299 EPTPVTMPDPTTTTTPTPFMNPVTAPTMPSPVT 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,496,120
Number of Sequences: 37544
Number of extensions: 470296
Number of successful extensions: 1551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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