Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1477
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   2.5  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    27   3.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.3  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 279 FFLKVRLYIIIT*LVMTSCSLWYTKCSITWR 371
           FF+K  +Y  +  L+MT C  + T    +WR
Sbjct: 399 FFIKFDIYFTLIVLIMTLCYCYVTVKITSWR 429


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 368 EREVLKLQNFDQMTVIFRNRSD*GLTKIALQHIIIKYLFV-VLNFKT 505
           E ++LK + + Q T+   NRS   +T + ++H     L + V++FKT
Sbjct: 338 ENDILKFKKYVQQTLKRLNRSVEEITDLEIKHFSRNCLNIKVMDFKT 384


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 272  KRIRSELRILIVELCNLTMTLPKTNF*SFVVSKID-LFRLSE 150
            KR+ +E   LI E C  +++L K N+  F  +  D LFR S+
Sbjct: 1249 KRVNTETLSLISEWCASSLSLIKANYDEFSSTVDDFLFRFSK 1290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,258
Number of Sequences: 5004
Number of extensions: 52373
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)