Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1476
         (797 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W5A2 Cluster: CG14770-PA; n=2; Sophophora|Rep: CG1477...    91   3e-17
UniRef50_Q0C774 Cluster: Pupal cuticle protein, putative; n=2; C...    85   3e-15
UniRef50_Q58IS8 Cluster: Putative uncharacterized protein; n=1; ...    40   0.096
UniRef50_UPI0000EBD222 Cluster: PREDICTED: hypothetical protein;...    36   0.89 
UniRef50_UPI0000E45D86 Cluster: PREDICTED: hypothetical protein;...    36   1.6  
UniRef50_A7S588 Cluster: Predicted protein; n=1; Nematostella ve...    35   2.1  
UniRef50_A0XWU7 Cluster: Sensor protein; n=1; Alteromonadales ba...    35   2.7  
UniRef50_UPI0000F2EBF5 Cluster: PREDICTED: similar to RNA polyme...    34   3.6  
UniRef50_Q9VXL1 Cluster: CG9163-PA, isoform A; n=16; Coelomata|R...    33   6.3  
UniRef50_Q4D4Y6 Cluster: Katanin-like protein, putative; n=2; Tr...    33   8.3  

>UniRef50_Q9W5A2 Cluster: CG14770-PA; n=2; Sophophora|Rep:
           CG14770-PA - Drosophila melanogaster (Fruit fly)
          Length = 151

 Score = 91.1 bits (216), Expect = 3e-17
 Identities = 38/67 (56%), Positives = 51/67 (76%)
 Frame = +1

Query: 1   AKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDD 180
           A SHQS+KF H+H VPVY+KKE  HL+K P+E G ++Q LK++HP++EH H  GLVLE+ 
Sbjct: 65  ATSHQSVKFHHYHAVPVYIKKEDQHLVKKPIEIGGTKQKLKILHPKSEHNHNHGLVLEN- 123

Query: 181 RHNIEHH 201
            H+  HH
Sbjct: 124 -HSESHH 129


>UniRef50_Q0C774 Cluster: Pupal cuticle protein, putative; n=2;
           Culicidae|Rep: Pupal cuticle protein, putative - Aedes
           aegypti (Yellowfever mosquito)
          Length = 159

 Score = 84.6 bits (200), Expect = 3e-15
 Identities = 41/82 (50%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
 Frame = +1

Query: 1   AKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDD 180
           A SHQS K  HFH VPVYVKKE    LKHP+E    + NLK++HPETEH H  GL LE+ 
Sbjct: 47  ATSHQSFKIHHFHAVPVYVKKEDQQFLKHPVEVSGIKHNLKIVHPETEHNHAHGLTLENH 106

Query: 181 RH-------NIEHHIASAGLEH 225
                       H +  AG EH
Sbjct: 107 SEFDSKLHGGYGHDLGHAGSEH 128


>UniRef50_Q58IS8 Cluster: Putative uncharacterized protein; n=1;
           Streptomyces sp. F11|Rep: Putative uncharacterized
           protein - Streptomyces sp. F11
          Length = 149

 Score = 39.5 bits (88), Expect = 0.096
 Identities = 22/40 (55%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
 Frame = -3

Query: 327 VLITSLLETTMLIASVFQTSMLQT-LFQTAVFKASVLKTS 211
           VL TS+L+T++L  SV +TS+L+T + +T V K SVLKTS
Sbjct: 46  VLKTSVLKTSVLKTSVLKTSVLKTSVLKTTVLKTSVLKTS 85



 Score = 33.9 bits (74), Expect = 4.8
 Identities = 18/34 (52%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
 Frame = -3

Query: 309 LETTMLIASVFQTSMLQT-LFQTAVFKASVLKTS 211
           L+T++L  SV +TS+L+T + +T+V K SVLKTS
Sbjct: 37  LKTSVLKTSVLKTSVLKTSVLKTSVLKTSVLKTS 70


>UniRef50_UPI0000EBD222 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 918

 Score = 36.3 bits (80), Expect = 0.89
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 3   QISPVDQVRTLPPRSCVREEGAQPP-SQAPS*KGKIRAKPQADSPRD*TQARRWTCPRG- 176
           Q SP       PP+SC++ +   PP S+AP      R+  Q  +PR   +A R   P G 
Sbjct: 465 QESPAAAPSPPPPKSCLKHKAPSPPASEAPPQAPAPRSPEQGAAPRGPPKAERAGAPSGA 524

Query: 177 --RQTQH 191
             R+T+H
Sbjct: 525 PERKTEH 531


>UniRef50_UPI0000E45D86 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 84

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 13/43 (30%), Positives = 32/43 (74%)
 Frame = -3

Query: 324 LITSLLETTMLIASVFQTSMLQTLFQTAVFKASVLKTSRSNMV 196
           ++T++++TT++  ++ +++M  TL +TA+ K +V+KT+  N +
Sbjct: 10  MMTTMMKTTLVKTAMMKSTMKTTLVKTAMMKTTVMKTTMMNQL 52


>UniRef50_A7S588 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 374

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 19/64 (29%), Positives = 38/64 (59%)
 Frame = -3

Query: 327 VLITSLLETTMLIASVFQTSMLQTLFQTAVFKASVLKTSRSNMVFNVVSVVLEDKSTAVL 148
           + +TS+L   +++ +V++T  ++T     +F A++  +     VF V  VV+ED S +V 
Sbjct: 50  MFLTSILGNCLILVTVYRTQRMRTAVN--LFIANMAISDIIQPVFGVPRVVVEDVSLSVS 107

Query: 147 VFSL 136
           +FS+
Sbjct: 108 IFSI 111


>UniRef50_A0XWU7 Cluster: Sensor protein; n=1; Alteromonadales
           bacterium TW-7|Rep: Sensor protein - Alteromonadales
           bacterium TW-7
          Length = 954

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +2

Query: 374 LTLNFSNQRTTVITTLNTDRLYLATAVRATNTKAINLIKASLNKQLSE 517
           LT +++     V+T +  + LYL   +++   K +NL+K+  N +L++
Sbjct: 233 LTRSYTYSVNVVLTGIENELLYLTNKIKSAEEKKLNLVKSQFNSELTK 280


>UniRef50_UPI0000F2EBF5 Cluster: PREDICTED: similar to RNA
           polymerase II subunit hsRPB4; n=1; Monodelphis
           domestica|Rep: PREDICTED: similar to RNA polymerase II
           subunit hsRPB4 - Monodelphis domestica
          Length = 195

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 58  KKEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIE 195
           K+ HSHL K  L+ G  ++       E + KHGG     +DR  IE
Sbjct: 65  KQHHSHLGKFHLDSGAYQETTLKCEKEKDKKHGGEYGQPEDRTQIE 110


>UniRef50_Q9VXL1 Cluster: CG9163-PA, isoform A; n=16; Coelomata|Rep:
           CG9163-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 840

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 16  SIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHP--ETEHKHGGGLVLEDDRHN 189
           S+  +HFH   + +K   +H  +  LE      N +L+ P  + +H H GG +++ +RH+
Sbjct: 52  SLPKKHFHRTSLLIKA-FNHKFRLDLEL-----NSQLLSPNIQQKHYHVGGYLVDGNRHD 105

Query: 190 IEH 198
           IEH
Sbjct: 106 IEH 108


>UniRef50_Q4D4Y6 Cluster: Katanin-like protein, putative; n=2;
           Trypanosoma cruzi|Rep: Katanin-like protein, putative -
           Trypanosoma cruzi
          Length = 923

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 106 SEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHI 204
           SE+ L  +H E E K  GG+V  +DR++IE  +
Sbjct: 42  SERRLTQLHEERERKSEGGVVAAEDRNSIERRL 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,400,651
Number of Sequences: 1657284
Number of extensions: 11480743
Number of successful extensions: 28792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28761
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)