Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1476
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702...    29   3.2  
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727...    29   5.7  
09_01_0003 - 95371-95433,95485-95715,95809-95862,96730-96972,985...    28   7.5  
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79...    28   9.9  

>01_06_1827 +
           40169001-40169263,40169358-40169472,40170090-40170201,
           40170556-40170623,40170798-40170852,40170948-40171027,
           40171811-40171924,40172178-40172296,40173064-40173181,
           40173264-40173394,40173535-40173688,40173922-40174017
          Length = 474

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 185 CLSSSRTSPPPCLCSVSG*ISLRFCSDFPFSRGCLRRWLC 66
           C        PP L  V          DF FSRG LR W C
Sbjct: 92  CTHEVDLDKPPVLQEVENFFKGHGVGDFTFSRGRLREWRC 131


>01_06_1282 +
           35972234-35972244,35972451-35972522,35972714-35972747,
           35973247-35973360,35974833-35975036,35975290-35975449,
           35976093-35976240,35976345-35976422,35976854-35976938,
           35977142-35977213
          Length = 325

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 73  HLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIASAGLE 222
           +LL++ + +  + +NL LI    +    GG+VLE D   I   ++  GLE
Sbjct: 245 YLLRNKVHRRAALENLDLIFLCLDEVVDGGIVLETDAKAILEKVSGHGLE 294


>09_01_0003 -
           95371-95433,95485-95715,95809-95862,96730-96972,
           98544-99317
          Length = 454

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 383 NFSNQRTTVITTLNTDRLYLATAVRATNTKAINLIKASLNKQLSEYVL 526
           ++ N    ++  + TD     TA+  T  +A++L  ++L K+LSE V+
Sbjct: 209 SYPNLTQALLLLVGTDLEKALTAIDETKAQALDLKVSNLKKELSEAVM 256


>08_01_0107 -
           789217-789984,790070-790219,790303-790890,790968-791093
          Length = 543

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = +1

Query: 31  HFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIAS 210
           H    P++    HS +   P  K +    ++   P  E   GGG       H+  HH +S
Sbjct: 370 HASSSPMHRAHHHSPVTPSP-SKARPPIQVRSASPRVERGGGGGGSYTPSLHSHRHHASS 428

Query: 211 AG 216
            G
Sbjct: 429 GG 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,475,187
Number of Sequences: 37544
Number of extensions: 320108
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)