Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1476
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    33   0.31 
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    33   0.31 
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        28   6.7  
Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +1

Query: 4   KSHQSIKFEHFHP-VPVYVKKEHSHLLKH---PLEKGKSEQNLKLIHPETEHKHGGGLVL 171
           KS    +  H+ P  P  VK +   + +H   PLEK     +LK++HPE  +        
Sbjct: 713 KSRSVERAHHYLPDSPANVKDQRKIIREHHYVPLEKRSQSLDLKVVHPEHHYVPLVRKTT 772

Query: 172 EDDRH--NIEHHIASA 213
           ED +   N EHH   A
Sbjct: 773 EDHQQKVNHEHHFIPA 788


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +1

Query: 4   KSHQSIKFEHFHP-VPVYVKKEHSHLLKH---PLEKGKSEQNLKLIHPETEHKHGGGLVL 171
           KS    +  H+ P  P  VK +   + +H   PLEK     +LK++HPE  +        
Sbjct: 713 KSRSVERAHHYLPDSPANVKDQRKIIREHHYVPLEKRSQSLDLKVVHPEHHYVPLVRKTT 772

Query: 172 EDDRH--NIEHHIASA 213
           ED +   N EHH   A
Sbjct: 773 EDHQQKVNHEHHFIPA 788


>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 481 VNSFRICSPHRCR*IKPVRVQRSND 407
           V S   CSPH  R IKP   +R ND
Sbjct: 571 VESLMKCSPHYVRCIKPNETKRPND 595


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 481 VNSFRICSPHRCR*IKPVRVQRSND 407
           V S   CSPH  R IKP   +R ND
Sbjct: 508 VESLMKCSPHYVRCIKPNETKRPND 532


>Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical
           protein C32A9.1 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 651 T*FKSNVSGQSRRENVCSV*SNLVKYVVKCEIRCYVFKMS 770
           T F  N  G S   N C + +N   Y+ +CE+    F+ S
Sbjct: 203 TDFAENPVGYSDSFNACEMRANQETYITRCEMTYIYFRQS 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,092,321
Number of Sequences: 27780
Number of extensions: 281174
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)