Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1476
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 404 TVITTLNTDRLYLATAVRATNTKAINLIK 490
           T+ TT  T     ATA     T A  LIK
Sbjct: 106 TITTTTTTTTTTTATAAATATTTATGLIK 134


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 4   KSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSE 111
           + ++ +K +      +Y+K  H+H  K  LE+ K++
Sbjct: 51  QEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTK 86


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 19 IKFEHFHPVPVYVKKE 66
          I ++H+H  PV+ K++
Sbjct: 6  IHYQHYHITPVFTKQK 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,442
Number of Sequences: 438
Number of extensions: 3089
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)